{
    "type": "genome",
    "identifier": "GCF_014384745.1",
    "organism": "Luoshenia tenuis",
    "title": "Luoshenia tenuis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014384745.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15783669",
        "wgs_master": "JACRSO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2763654",
        "species_taxid": "2763654",
        "organism_name": "Luoshenia tenuis",
        "infraspecific_name": "strain=NSJ-44",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/01",
        "asm_name": "ASM1438474v1",
        "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
        "gbrs_paired_asm": "GCA_014384745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/384/745/GCF_014384745.1_ASM1438474v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2655978",
        "genome_size_ungapped": "2655978",
        "gc_percent": "57.500000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014384745.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "2488",
        "protein_coding_gene_count": "2415",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-01",
    "dateModified": "2020-09-01",
    "datePublished": "2020-09-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Luoshenia tenuis"
        ],
        "sample_taxid": [
            "2763654"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.744 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2655978",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "1011580",
        "N50 (bp)": "533060",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.6",
        "Number of CDSs": "2486",
        "Average Protein Length": "309.0",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Luoshenia tenuis",
                "strain": "strain=NSJ-44",
                "accession": "GCA_014384745.1",
                "taxid": 2763654,
                "species_taxid": 2763654,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 880,
                "total_fragments": 880,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
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            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005845105.1",
                "gtdb_species": "s__GCA-900066905 sp900066905",
                "ani": 95.6629,
                "matched_fragments": 805,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__GCA-900066905;g__GCA-900066905",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.17",
                "min_intra_species_ani": "95.66",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018710985.1",
                "gtdb_species": "s__Limiplasma pullicola",
                "ani": 76.5301,
                "matched_fragments": 67,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Limiplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900540045.1",
                "gtdb_species": "s__Limiplasma merdipullorum",
                "ani": 76.4772,
                "matched_fragments": 53,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Limiplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "97.19",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017937505.1",
                "gtdb_species": "s__Ventricola sp017937505",
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                "matched_fragments": 53,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Ventricola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900542005.1",
                "gtdb_species": "s__Parachristensenella sp900542005",
                "ani": 76.0304,
                "matched_fragments": 67,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__UMGS416;g__Parachristensenella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018716755.1",
                "gtdb_species": "s__Alectryocaccomicrobium excrementavium",
                "ani": 75.8193,
                "matched_fragments": 52,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__Alectryocaccomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Luoshenia",
        "tenuis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}