# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_8	LOCUS_00080	sequence01:8709..9380(+)	partial			WP_002917062.1	tRNA (adenine(22)-N(1))-methyltransferase TrmK	68.2	67.7	45.8
MGA_46	LOCUS_00460	sequence01:50134..50361(-)	partial			WP_010906388.1	helix-turn-helix transcriptional regulator	88.0	64.7	43.9
MGA_65	LOCUS_00650	sequence01:67789..68940(-)	partial			WP_011392115.1	stage II sporulation protein P	58.5	62.6	36.4
MGA_111	LOCUS_01110	sequence01:122094..123125(-)	partial			WP_001035315.1	pneumococcal surface protein A	54.8	30.4	49.7
MGA_125	LOCUS_01250	sequence01:137797..138702(+)	partial			WP_011861159.1	signal recognition particle-docking protein FtsY	99.7	70.7	56.8
MGA_126	LOCUS_01260	sequence01:138758..139336(+)	partial			WP_003435607.1	ribonuclease PH	95.3	41.9	48.4
MGA_130	LOCUS_01300	sequence01:140820..141884(+)	partial			WP_011057595.1	LCP family protein	66.7	55.2	33.9
MGA_133	LOCUS_01330	sequence01:145031..145207(+)	partial			WP_003357777.1	30S ribosomal protein S21	74.1	74.1	76.7
MGA_161	LOCUS_01610	sequence01:172561..173109(+)	partial			WP_010964593.1	nucleotide exchange factor GrpE	72.5	65.5	56.1
MGA_170	LOCUS_01700	sequence01:183968..184294(+)	partial			WP_011119731.1	cupin domain-containing protein	96.3	70.3	39.4
MGA_172	LOCUS_01720	sequence01:184728..184940(+)	partial			WP_002901318.1	DUF896 family protein	75.7	62.4	60.4
MGA_197	LOCUS_01970	sequence01:204920..206806(+)	partial			WP_001035315.1	pneumococcal surface protein A	42.2	38.3	41.9
MGA_203	LOCUS_02030	sequence01:214424..214636(+)	partial			WP_000737133.1	helix-turn-helix transcriptional regulator	88.6	62.6	48.4
MGA_224	LOCUS_02240	sequence01:235673..236464(-)	partial			WP_011837248.1	GNAT family N-acetyltransferase	52.9	73.5	32.6
MGA_227	LOCUS_02270	sequence01:241963..242670(+)	partial			WP_009931068.1	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	87.7	45.1	51.0
MGA_257	LOCUS_02570	sequence01:277461..278468(-)	partial			WP_009897898.1	delta-lactam-biosynthetic de-N-acetylase	69.0	75.6	46.9
MGA_258	LOCUS_02580	sequence01:278646..279335(-)	partial			WP_000737133.1	helix-turn-helix transcriptional regulator	28.4	65.7	43.1
MGA_259	LOCUS_02590	sequence01:279752..280435(+)	partial			WP_011057070.1	histidine phosphatase family protein	69.2	76.5	30.7
MGA_271	LOCUS_02710	sequence01:292671..293312(-)	partial			WP_000721649.1	SH3 domain-containing protein	44.6	16.0	33.7
MGA_274	LOCUS_02740	sequence01:293856..296576(-)	partial			WP_041272605.1	hypothetical protein	7.1	42.1	51.6
MGA_296	LOCUS_02960	sequence01:317475..317879(-)	partial			WP_010774190.1	helix-turn-helix transcriptional regulator	44.0	55.1	42.4
MGA_300	LOCUS_03000	sequence01:320857..321486(+)	partial			WP_003434944.1	cell wall hydrolase	58.4	68.5	29.5
MGA_302	LOCUS_03020	sequence01:322571..325216(-)	partial			WP_000200226.1	YfhO family protein	73.2	71.9	21.8
MGA_316	LOCUS_03160	sequence01:339082..339939(+)	partial			WP_003245712.1	translocation-enhancing protein TepA	69.8	81.2	65.8
MGA_323	LOCUS_03230	sequence01:346948..347904(+)	partial			WP_010964264.1	ComEC/Rec2 family competence protein	75.8	74.4	45.5
MGA_337	LOCUS_03370	sequence01:361330..361962(+)	partial			WP_021365081.1	endonuclease III	96.2	51.9	43.6
MGA_338	LOCUS_03380	sequence01:362216..362764(+)	internal_stop_codon	362189..362191(+)		WP_014518847.1	class I SAM-dependent methyltransferase	92.9	78.0	57.9
MGA_354	LOCUS_03540	sequence01:383133..384908(-)	partial			WP_128975638.1	LTA synthase family protein	85.4	73.7	25.3
MGA_361	LOCUS_03610	sequence01:391027..391506(-)	partial			WP_005817206.1	Gx transporter family protein	83.0	64.1	41.2
MGA_364	LOCUS_03640	sequence01:393283..393750(+)	partial			WP_003641273.1	FMN-binding protein	84.5	43.2	40.4
MGA_374	LOCUS_03740	sequence01:404239..404745(-)	frameshift		404903	WP_011793177.1	AzlC family ABC transporter permease	74.4	51.8	31.0
MGA_385	LOCUS_03850	sequence01:415437..416888(+)	partial			WP_011461151.1	M56 family metallopeptidase	53.2	39.6	27.4
MGA_386	LOCUS_03860	sequence01:417190..418275(+)	partial			WP_005809578.1	helix-turn-helix domain-containing protein	67.9	60.3	30.1
MGA_391	LOCUS_03910	sequence01:422720..423259(-)	partial			WP_011948594.1	biotin transporter BioY	74.3	73.1	37.6
MGA_407	LOCUS_04070	sequence01:437935..439533(-)	partial			WP_011861673.1	cell wall-binding glycosyl-hydrolase Cwp19	82.9	62.4	43.8
MGA_417	LOCUS_04170	sequence01:451404..453188(+)	partial			WP_164925470.1	serine/threonine-protein kinase	45.1	59.8	34.6
MGA_422	LOCUS_04220	sequence01:457842..458909(-)	partial			WP_000678909.1	site-specific integrase	71.8	73.0	22.3
MGA_436	LOCUS_04360	sequence01:464767..465438(+)	partial			WP_000599089.1	YdcK family protein	54.7	38.0	28.9
MGA_441	LOCUS_04410	sequence01:467895..468416(+)	partial			WP_012583672.1	DNA primase	42.8	13.2	39.5
MGA_456	LOCUS_04560	sequence01:474506..475108(+)	partial			WP_012805052.1	dUTP diphosphatase	66.0	71.5	41.2
MGA_475	LOCUS_04750	sequence01:486107..489676(+)	partial			WP_011101741.1	tape measure protein	27.0	23.0	25.2
MGA_484	LOCUS_04840	sequence01:496835..497452(+)	partial			WP_001056063.1	SH3 domain-containing protein	45.4	22.8	38.9
MGA_485	LOCUS_04850	sequence01:497463..498716(+)	partial			WP_000753855.1	choline-binding protein PcpA	28.8	17.1	48.8
MGA_489	LOCUS_04890	sequence01:502443..503249(+)	partial			WP_041272396.1	hypothetical protein	32.5	73.1	32.3
MGA_494	LOCUS_04940	sequence01:506780..507886(+)	partial			WP_000753855.1	choline-binding protein PcpA	29.9	15.8	36.0
MGA_495	LOCUS_04950	sequence01:507965..508756(-)	partial			WP_000762802.1	AraC family transcriptional regulator	40.3	38.5	37.7
MGA_498	LOCUS_04980	sequence01:512084..513418(-)	partial			WP_001035315.1	pneumococcal surface protein A	21.2	14.9	43.6
MGA_534	LOCUS_05340	sequence01:548088..548984(+)	partial			WP_015943647.1	SGNH/GDSL hydrolase family protein	65.1	83.3	31.5
MGA_551	LOCUS_05510	sequence01:565651..566613(-)	partial			WP_011082532.1	M15 family metallopeptidase	52.8	76.7	52.6
MGA_566	LOCUS_05660	sequence01:577411..578445(-)	partial			WP_164921628.1	Gfo/Idh/MocA family oxidoreductase	79.4	72.8	29.7
MGA_575	LOCUS_05750	sequence01:586510..587409(+)	partial			WP_002682345.1	CorA family divalent cation transporter	60.9	59.4	33.5
MGA_579	LOCUS_05790	sequence01:590499..591611(+)	partial			WP_011389343.1	diguanylate cyclase	40.5	37.4	33.3
MGA_598	LOCUS_05980	sequence01:604664..606574(-)	frameshift		606572	WP_011860929.1	transporter substrate-binding domain-containing protein	98.0	76.2	35.5
MGA_599	LOCUS_05990	sequence01:606549..607190(-)	frameshift		606572	WP_011860929.1	transporter substrate-binding domain-containing protein	85.4	21.5	41.0
MGA_608	LOCUS_06080	sequence01:614161..620436(-)	partial			WP_001035315.1	pneumococcal surface protein A	8.4	28.4	52.0
MGA_616	LOCUS_06160	sequence01:629212..631002(+)	partial			WP_015253363.1	sensor histidine kinase	70.0	69.5	28.3
MGA_617	LOCUS_06170	sequence01:630983..632452(+)	partial			WP_001067278.1	AraC family transcriptional regulator	20.9	24.9	38.2
MGA_629	LOCUS_06290	sequence01:645621..648233(+)	partial			WP_011861061.1	diguanylate cyclase	96.8	71.4	32.1
MGA_636	LOCUS_06360	sequence01:654111..654812(+)	partial			WP_011203637.1	GDSL-type esterase/lipase family protein	95.7	26.2	41.3
MGA_641	LOCUS_06410	sequence01:657282..662120(+)	partial			WP_001035315.1	pneumococcal surface protein A	10.9	31.7	44.2
MGA_653	LOCUS_06530	sequence01:676589..681649(+)	partial			WP_001035315.1	pneumococcal surface protein A	10.4	28.4	54.5
MGA_654	LOCUS_06540	sequence01:682433..687511(+)	partial			WP_001035315.1	pneumococcal surface protein A	10.4	28.4	52.5
MGA_674	LOCUS_06740	sequence01:709918..710259(-)	partial			WP_002261916.1	helix-hairpin-helix domain-containing protein	68.1	39.6	47.2
MGA_685	LOCUS_06850	sequence01:723127..723528(-)	partial			WP_164920639.1	DUF2752 domain-containing protein	60.9	58.2	37.2
MGA_699	LOCUS_06990	sequence01:734848..737436(+)	partial			WP_011860848.1	bifunctional diguanylate cyclase/phosphodiesterase	48.4	40.5	40.0
MGA_701	LOCUS_07010	sequence01:737972..742615(+)	partial			WP_130435197.1	ATP-binding protein	24.1	51.8	40.5
MGA_706	LOCUS_07060	sequence01:746610..747311(+)	partial			WP_013363547.1	hypothetical protein	63.9	67.7	40.1
MGA_708	LOCUS_07080	sequence01:748201..749505(+)	partial			WP_009940900.1	diaminobutyrate--2-oxoglutarate transaminase family protein	93.3	44.3	26.2
MGA_709	LOCUS_07090	sequence01:749586..750587(-)	partial			WP_011388046.1	30S ribosomal protein S1	77.5	46.4	29.2
MGA_725	LOCUS_07250	sequence01:768275..770320(+)	partial			WP_011861665.1	single-stranded-DNA-specific exonuclease RecJ	81.5	68.5	37.3
MGA_731	LOCUS_07310	sequence01:775861..776799(+)	partial			WP_011948012.1	nucleoside kinase	92.3	52.0	31.6
MGA_734	LOCUS_07340	sequence01:779484..780230(+)	partial			WP_012099544.1	nucleoside triphosphate pyrophosphohydrolase	99.2	51.1	45.9
MGA_743	LOCUS_07430	sequence01:785241..790631(+)	partial			WP_001035315.1	pneumococcal surface protein A	9.8	28.4	49.7
MGA_750	LOCUS_07500	sequence01:797042..797506(+)	partial			WP_003424287.1	aspartate kinase	99.4	37.3	34.0
MGA_757	LOCUS_07570	sequence01:803899..805152(-)	partial			WP_000727870.1	phosphorylcholine esterase CbpE	41.0	29.0	36.0
MGA_758	LOCUS_07580	sequence01:805528..807756(+)	partial			WP_000753855.1	choline-binding protein PcpA	20.8	19.7	42.9
MGA_766	LOCUS_07660	sequence01:812391..813146(+)	partial			WP_001244955.1	recombinase family protein	94.8	51.0	36.1
MGA_782	LOCUS_07820	sequence01:827546..828877(+)	partial			WP_035454417.1	MobQ family relaxase	44.9	28.4	41.5
MGA_783	LOCUS_07830	sequence01:828925..829665(+)	partial			WP_004596761.1	DNA primase	35.8	14.0	41.3
MGA_784	LOCUS_07840	sequence01:829559..830890(+)	partial			WP_010714181.1	VapE family protein	76.1	40.8	34.6
MGA_825	LOCUS_08250	sequence01:878301..879707(+)	partial			WP_015944693.1	protein translocase subunit SecDF	88.2	49.4	33.2
MGA_826	LOCUS_08260	sequence01:879707..880675(+)	frameshift		879704	WP_002485294.1	protein translocase subunit SecDF	97.8	39.3	32.9
MGA_827	LOCUS_08270	sequence01:880807..881589(+)	partial			WP_011086448.1	sugar phosphate isomerase/epimerase	63.1	58.3	29.2
MGA_837	LOCUS_08370	sequence01:889877..890719(+)	partial			WP_162992323.1	GH25 family lysozyme	65.0	73.0	30.4
MGA_845	LOCUS_08450	sequence01:900832..902607(+)	partial			WP_057672901.1	ABC transporter ATP-binding protein	70.4	68.2	33.3
MGA_861	LOCUS_08610	sequence01:918984..919355(+)	partial			WP_010989355.1	T7SS effector LXG polymorphic toxin	94.3	26.2	47.1
MGA_892	LOCUS_08920	sequence01:945837..947027(-)	partial			WP_011393799.1	ATP-binding protein	68.4	57.6	43.7
MGA_905	LOCUS_09050	sequence01:962794..963129(-)	frameshift,internal_stop_codon	962791..962793(-),963193..963195(-),962764..962766(-)	963096,963198,963255	WP_011461583.1	GNAT family N-acetyltransferase	91.0	54.3	59.8
MGA_906	LOCUS_09060	sequence01:963680..967231(-)	partial			WP_207553109.1	endo-alpha-N-acetylgalactosaminidase family protein	95.0	57.1	47.0
MGA_919	LOCUS_09190	sequence01:975566..975748(+)	frameshift		975706	WP_005808764.1	class I SAM-dependent methyltransferase	60.0	14.6	75.0
MGA_975	LOCUS_09750	sequence01:1035980..1037293(-)	partial			WP_000358451.1	hypothetical protein	42.6	40.6	40.7
MGA_993	LOCUS_09930	sequence01:1056584..1056886(+)	partial			WP_005812269.1	energy-coupling factor ABC transporter substrate-binding protein	71.0	68.9	64.8
MGA_999	LOCUS_09990	sequence01:1061235..1062329(+)	partial			WP_011948632.1	cobalt-precorrin 5A hydrolase	71.7	75.7	34.9
MGA_1026	LOCUS_10260	sequence01:1087819..1089084(+)	partial			WP_010965596.1	GTPase HflX	95.7	69.6	44.7
MGA_1027	LOCUS_10270	sequence01:1089162..1089659(-)	partial			WP_012259582.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	84.8	68.7	33.6
MGA_1031	LOCUS_10310	sequence01:1092721..1093821(+)	partial			WP_011861061.1	diguanylate cyclase	42.6	13.3	43.7
MGA_1032	LOCUS_10320	sequence01:1093920..1094183(-)	partial			WP_011120772.1	GrpB family protein	96.6	47.6	37.8
MGA_1039	LOCUS_10390	sequence01:1098031..1099191(+)	partial			WP_003358911.1	stage III sporulation protein AE	70.7	72.1	26.2
MGA_1054	LOCUS_10540	sequence01:1110717..1111628(+)	partial			WP_010942707.1	NAD(+)/NADH kinase	73.3	78.9	41.5
MGA_1061	LOCUS_10610	sequence01:1118413..1119120(+)	partial			WP_003816121.1	putative ABC transporter permease	86.4	47.4	33.0
MGA_1072	LOCUS_10720	sequence01:1129690..1130022(-)	partial			WP_010905770.1	8-oxo-dGTP diphosphatase	83.6	57.4	40.2
MGA_1073	LOCUS_10730	sequence01:1130536..1137912(+)	partial			WP_001035315.1	pneumococcal surface protein A	8.0	31.7	51.0
MGA_1075	LOCUS_10750	sequence01:1139758..1140735(+)	partial			WP_011461003.1	aldolase catalytic domain-containing protein	87.4	50.5	30.2
MGA_1081	LOCUS_10810	sequence01:1144568..1145917(-)	frameshift,internal_stop_codon	1145935..1145937(-)	1145910	WP_010966518.1	peptidoglycan-binding domain-containing protein	60.8	62.0	47.1
MGA_1087	LOCUS_10870	sequence01:1150738..1151670(-)	partial			WP_011861061.1	diguanylate cyclase	92.9	24.1	33.1
MGA_1094	LOCUS_10940	sequence01:1160459..1162141(+)	partial			WP_022621368.1	GGDEF domain-containing protein	26.6	49.8	36.8
MGA_1098	LOCUS_10980	sequence01:1165006..1166700(+)	partial			WP_001035315.1	pneumococcal surface protein A	25.9	23.1	43.2
MGA_1099	LOCUS_10990	sequence01:1166792..1168330(-)	partial			WP_003244566.1	two-component system response regulator YesN	22.7	32.6	41.3
MGA_1102	LOCUS_11020	sequence01:1171304..1172302(-)	partial			WP_000163820.1	Gfo/Idh/MocA family oxidoreductase	62.7	62.1	28.8
MGA_1114	LOCUS_11140	sequence01:1184240..1184779(-)	partial			WP_041272333.1	peptidoglycan-binding protein	78.8	30.8	33.3
MGA_1115	LOCUS_11150	sequence01:1184798..1186207(-)	partial			WP_010966518.1	peptidoglycan-binding domain-containing protein	58.4	63.4	47.5
MGA_1131	LOCUS_11310	sequence01:1199405..1200316(-)	partial			WP_002198132.1	Ppx/GppA family phosphatase	98.7	57.6	29.7
MGA_1141	LOCUS_11410	sequence01:1207199..1208023(+)	partial			WP_011861372.1	4Fe-4S binding protein	65.3	69.6	30.2
MGA_1165	LOCUS_11650	sequence01:1231370..1232980(-)	partial			WP_003148085.1	colicin E5-related ribonuclease	17.9	14.0	32.4
MGA_1171	LOCUS_11710	sequence01:1239296..1240096(+)	partial			WP_014207793.1	class I SAM-dependent methyltransferase	49.6	51.1	37.0
MGA_1178	LOCUS_11780	sequence01:1244339..1245088(+)	partial			WP_002669622.1	DUF1700 domain-containing protein	32.5	45.5	46.9
MGA_1193	LOCUS_11930	sequence01:1259409..1260479(-)	partial			WP_000944673.1	M23 family metallopeptidase	34.8	36.4	42.7
MGA_1200	LOCUS_12000	sequence01:1265712..1268195(-)	partial			WP_011339463.1	glucoamylase family protein	63.4	19.3	24.6
MGA_1208	LOCUS_12080	sequence01:1277931..1280546(+)	partial			WP_164930970.1	MMPL family transporter	23.2	29.4	32.7
MGA_1209	LOCUS_12090	sequence01:1280543..1284037(+)	partial			WP_011461428.1	InlB B-repeat-containing protein	19.7	8.8	32.8
MGA_1214	LOCUS_12140	sequence01:1288034..1288669(-)	partial			WP_013389999.1	DUF1287 domain-containing protein	81.5	59.9	46.6
MGA_1219	LOCUS_12190	sequence01:1293622..1294413(+)	partial			WP_001097906.1	AraC family transcriptional regulator	46.0	29.6	30.6
MGA_1236	LOCUS_12360	sequence01:1308667..1309857(-)	partial			WP_001035315.1	pneumococcal surface protein A	33.6	21.0	38.1
MGA_1237	LOCUS_12370	sequence01:1310004..1310636(-)	partial			WP_005092819.1	M23 family metallopeptidase	50.5	28.4	34.9
MGA_1249	LOCUS_12490	sequence01:1318935..1319897(-)	partial			WP_011861038.1	NlpC/P60 family protein	97.2	47.7	44.8
MGA_1253	LOCUS_12530	sequence01:1321655..1322161(-)	partial			WP_010964161.1	ribonuclease domain-containing protein	63.1	67.3	50.0
MGA_1283	LOCUS_12830	sequence01:1343993..1345732(-)	partial			WP_011108097.1	DUF4373 domain-containing protein	22.5	38.5	36.2
MGA_1287	LOCUS_12870	sequence01:1347651..1348280(+)	partial			WP_010965137.1	transcriptional repressor LexA	35.9	36.8	37.3
MGA_1290	LOCUS_12900	sequence01:1350151..1352607(-)	partial			WP_011861071.1	CotH kinase family protein	50.2	65.0	27.6
MGA_1294	LOCUS_12940	sequence01:1355010..1355339(-)	partial			WP_011083612.1	helix-turn-helix transcriptional regulator	65.1	51.8	36.6
MGA_1296	LOCUS_12960	sequence01:1356051..1357538(-)	partial			WP_015261871.1	HAMP domain-containing sensor histidine kinase	56.0	59.3	39.2
MGA_1312	LOCUS_13120	sequence01:1367257..1368354(+)	partial			WP_090038748.1	N-acetylmuramoyl-L-alanine amidase family protein	37.0	44.1	53.6
MGA_1322	LOCUS_13210	sequence02:2111..3067(+)	partial			WP_048064724.1	alpha/beta hydrolase	71.7	74.0	36.6
MGA_1327	LOCUS_13260	sequence02:8336..9820(+)	partial			WP_003439379.1	ferrous iron transport protein B	96.0	65.9	53.8
MGA_1352	LOCUS_13510	sequence02:29897..30646(+)	partial			WP_003439379.1	ferrous iron transport protein B	97.2	34.4	54.7
MGA_1353	LOCUS_13520	sequence02:30742..32049(-)	partial			WP_012259364.1	ATP-binding protein	56.1	48.6	38.1
MGA_1355	LOCUS_13540	sequence02:32889..35159(+)	partial			WP_003722711.1	sugar ABC transporter substrate-binding protein	31.1	53.8	24.1
MGA_1360	LOCUS_13590	sequence02:40317..43193(+)	partial			WP_000358451.1	hypothetical protein	17.1	33.4	52.1
MGA_1363	LOCUS_13620	sequence02:44649..45626(+)	partial			WP_011460782.1	FkbM family methyltransferase	53.8	47.4	35.4
MGA_1378	LOCUS_13770	sequence02:61566..62087(+)	partial			WP_206818212.1	DUF2726 domain-containing protein	74.0	44.6	38.8
MGA_1382	LOCUS_13810	sequence02:63308..64060(-)	partial			WP_011109117.1	hybrid sensor histidine kinase/response regulator transcription factor	40.0	6.9	34.0
MGA_1402	LOCUS_14010	sequence02:80835..82652(+)	partial			WP_002682380.1	ABC transporter permease	37.2	66.6	50.4
MGA_1404	LOCUS_14030	sequence02:83791..85410(+)	partial			WP_002682378.1	ATP-binding cassette domain-containing protein	45.6	64.4	64.1
MGA_1414	LOCUS_14130	sequence02:94075..96249(+)	partial			WP_005810017.1	hypothetical protein	71.3	59.9	24.8
MGA_1417	LOCUS_14160	sequence02:98215..98436(+)	partial			WP_009967401.1	helix-turn-helix transcriptional regulator	90.4	58.9	45.5
MGA_1427	LOCUS_14260	sequence02:108733..110475(+)	partial			WP_005110226.1	DUF4173 domain-containing protein	51.7	56.7	24.8
MGA_1432	LOCUS_14310	sequence02:113758..114603(-)	partial			WP_010879376.1	ABC transporter permease	58.4	64.9	33.5
MGA_1468	LOCUS_14670	sequence02:143938..145710(+)	partial			WP_000602912.1	type I-C CRISPR-associated protein Cas8c/Csd1	69.8	67.3	26.0
MGA_1472	LOCUS_14710	sequence02:148400..148660(+)	partial			WP_014626042.1	CRISPR-associated endonuclease Cas2	70.9	63.5	54.1
MGA_1477	LOCUS_14760	sequence02:157290..157895(+)	partial			WP_226319392.1	GNAT family N-acetyltransferase	72.6	78.4	27.4
MGA_1479	LOCUS_14780	sequence02:158636..159265(+)	partial			WP_010937932.1	TetR/AcrR family transcriptional regulator	25.4	28.5	39.6
MGA_1483	LOCUS_14820	sequence02:161342..161584(+)	partial			WP_018365292.1	YafY family protein	78.8	21.1	71.4
MGA_1486	LOCUS_14850	sequence02:164317..164757(+)	partial			WP_011461981.1	response regulator transcription factor	60.3	38.3	40.9
MGA_1488	LOCUS_14870	sequence02:166202..166567(+)	partial			WP_000997689.1	replication initiator protein A	75.2	30.9	33.3
MGA_1499	LOCUS_14980	sequence02:173799..174428(+)	partial			WP_004596761.1	DNA primase	39.7	13.0	32.9
MGA_1500	LOCUS_14990	sequence02:174400..175701(+)	partial			WP_010939463.1	phage/plasmid primase, P4 family	67.9	35.2	32.9
MGA_1503	LOCUS_15020	sequence02:176995..178683(+)	partial			WP_106726897.1	Ti-type conjugative transfer relaxase TraA	26.2	15.1	47.0
MGA_1533	LOCUS_15320	sequence02:207627..207950(-)	internal_stop_codon	207993..207995(-)		WP_003434301.1	nitroreductase family protein	99.1	53.8	63.2
MGA_1534	LOCUS_15330	sequence02:207993..208217(-)	internal_stop_codon	207993..207995(-)		WP_003434301.1	nitroreductase family protein	94.6	36.0	56.3
MGA_1536	LOCUS_15350	sequence02:209333..212254(-)	partial			WP_011108900.1	DUF6259 domain-containing protein	55.0	75.4	25.7
MGA_1544	LOCUS_15430	sequence02:222048..228584(+)	partial			WP_001035315.1	pneumococcal surface protein A	8.1	28.3	44.3
MGA_1549	LOCUS_15480	sequence02:234150..235037(+)	partial			WP_003234977.1	bacillibactin transport transcriptional regulator Btr	56.9	30.8	30.4
MGA_1550	LOCUS_15490	sequence02:235232..236113(+)	partial			WP_013098733.1	AraC family transcriptional regulator	34.8	36.6	34.3
MGA_1552	LOCUS_15510	sequence02:237338..238723(-)	partial			WP_008766052.1	hypothetical protein	46.4	48.8	26.3
MGA_1553	LOCUS_15520	sequence02:238895..245497(-)	partial			WP_000458116.1	choline-binding protein CbpA	9.6	32.0	47.3
MGA_1560	LOCUS_15590	sequence02:250709..252085(+)	partial			WP_000162279.1	ATP-binding protein	78.8	63.7	32.0
MGA_1578	LOCUS_15770	sequence02:272667..273809(-)	partial			WP_009893196.1	serine racemase VanT catalytic subunit	95.5	51.0	47.1
MGA_1579	LOCUS_15780	sequence02:273815..274276(-)	partial			WP_011056695.1	serine O-acetyltransferase	56.2	36.2	47.8
MGA_1592	LOCUS_15910	sequence02:286726..288054(+)	partial			WP_000635991.1	family 10 glycosylhydrolase	83.3	71.7	35.3
MGA_1593	LOCUS_15920	sequence02:288070..289716(+)	partial			WP_011392054.1	N-acetylmuramoyl-L-alanine amidase	37.6	31.7	32.4
MGA_1594	LOCUS_15930	sequence02:289904..290263(+)	partial			WP_003426573.1	preprotein translocase subunit YajC	68.9	84.5	47.6
MGA_1602	LOCUS_16010	sequence02:296067..296687(+)	partial			WP_011948833.1	TetR/AcrR family transcriptional regulator	33.0	33.0	45.6
MGA_1620	LOCUS_16190	sequence02:315247..315876(+)	internal_stop_codon	315874..315876(+)		WP_001035315.1	pneumococcal surface protein A	65.1	22.1	44.5
MGA_1625	LOCUS_16240	sequence02:317987..323887(-)	partial			WP_008766049.1	DUF4855 domain-containing protein	15.5	50.1	27.9
MGA_1628	LOCUS_16270	sequence02:325167..326813(-)	partial			WP_010880620.1	AMP-binding protein	91.6	58.1	28.8
MGA_1630	LOCUS_16290	sequence02:328368..330257(-)	partial			WP_041271970.1	diguanylate cyclase	55.0	61.9	27.7
MGA_1631	LOCUS_16300	sequence02:330303..337850(-)	partial			WP_010886402.1	surfactin non-ribosomal peptide synthetase SrfAA	78.1	55.6	31.0
MGA_1632	LOCUS_16310	sequence02:338151..338585(+)	partial			WP_004398494.1	cupin domain-containing protein	91.0	70.4	67.2
MGA_1636	LOCUS_16350	sequence02:343707..346247(+)	partial			WP_011459276.1	M56 family metallopeptidase	49.2	55.9	43.2
MGA_1637	LOCUS_16360	sequence02:346299..347087(-)	partial			WP_010943419.1	class I SAM-dependent methyltransferase	72.9	78.8	29.9
MGA_1665	LOCUS_16640	sequence02:373228..373746(+)	partial			WP_003704933.1	NeuD/PglB/VioB family sugar acetyltransferase	95.3	40.0	35.1
MGA_1669	LOCUS_16680	sequence02:376150..376938(+)	partial			WP_011704925.1	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	52.7	20.8	36.2
MGA_1671	LOCUS_16700	sequence02:378238..379335(+)	partial			WP_011963384.1	glycosyltransferase family 4 protein	67.9	67.5	27.4
MGA_1677	LOCUS_16760	sequence02:385173..385847(+)	partial			WP_015039038.1	glycosyltransferase family 4 protein	76.3	46.1	30.8
MGA_1687	LOCUS_16860	sequence02:396418..397095(+)	partial			WP_003244666.1	sortase SrtA	68.9	77.8	31.0
MGA_1707	LOCUS_17060	sequence02:420649..425931(+)	partial			WP_001035315.1	pneumococcal surface protein A	10.0	28.4	52.0
MGA_1708	LOCUS_17070	sequence02:426115..427815(-)	partial			WP_005784478.1	FAD-dependent oxidoreductase	95.9	65.6	52.8
MGA_1709	LOCUS_17080	sequence02:427812..428132(-)	partial			WP_035214503.1	rhodanese-like domain-containing protein	78.3	69.0	45.7
MGA_1710	LOCUS_17090	sequence02:428129..428440(-)	partial			WP_010881251.1	thioredoxin	94.2	69.8	50.5
MGA_1712	LOCUS_17110	sequence02:429507..430118(-)	partial			WP_003244693.1	CAP domain-containing protein	65.0	51.4	68.2
MGA_1736	LOCUS_17350	sequence02:455596..458244(+)	partial			WP_011057696.1	GGDEF domain-containing phosphodiesterase	26.8	33.7	33.3
MGA_1738	LOCUS_17370	sequence02:459168..460307(+)	partial			WP_012257659.1	glycosyltransferase family 4 protein	35.1	30.9	31.9
MGA_1744	LOCUS_17430	sequence02:466381..467598(+)	partial			WP_010876015.1	glycosyltransferase	51.9	50.9	29.5
MGA_1746	LOCUS_17450	sequence02:469132..469851(+)	partial			WP_005694305.1	DUF1919 domain-containing protein	74.9	83.5	29.8
MGA_1749	LOCUS_17480	sequence02:471836..474088(+)	partial			WP_196793289.1	PAS domain-containing hybrid sensor histidine kinase/response regulator	71.6	66.6	46.4
MGA_1750	LOCUS_17490	sequence02:474346..476250(+)	partial			WP_000458116.1	choline-binding protein CbpA	18.8	16.7	43.3
MGA_1753	LOCUS_17520	sequence02:479619..480791(-)	partial			WP_010966584.1	HAD family hydrolase	77.7	58.9	32.4
MGA_1758	LOCUS_17570	sequence02:485061..490808(+)	partial			WP_000358451.1	hypothetical protein	8.6	32.8	54.2
MGA_1761	LOCUS_17600	sequence02:493523..494353(-)	internal_stop_codon	494534..494536(-)		WP_013099311.1	DNA-binding transcriptional regulator CytR	97.1	78.9	34.9
MGA_1764	LOCUS_17630	sequence02:495539..495982(+)	frameshift		495549	WP_011837415.1	GNAT family protein	83.0	66.7	42.4
MGA_1789	LOCUS_17880	sequence02:520942..521397(+)	partial			WP_000448282.1	NINE protein	68.9	59.9	37.5
MGA_1790	LOCUS_17890	sequence02:521611..522378(+)	partial			WP_011970686.1	class I SAM-dependent methyltransferase	61.2	57.6	27.6
MGA_1796	LOCUS_17950	sequence02:526227..526976(+)	partial			WP_000774716.1	phage replisome organizer N-terminal domain-containing protein	50.2	43.7	64.0
MGA_1801	LOCUS_18000	sequence02:530284..531051(-)	partial			WP_001035315.1	pneumococcal surface protein A	79.6	31.8	36.8
MGA_1818	LOCUS_18170	sequence02:544241..544666(-)	partial			WP_013528330.1	bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE/phosphotransferase	80.1	22.7	46.1
MGA_1826	LOCUS_18250	sequence02:551007..552236(-)	partial			WP_004617473.1	endolytic transglycosylase MltG	66.0	63.7	34.1
MGA_1861	LOCUS_18600	sequence02:585565..587085(+)	partial			WP_196793289.1	PAS domain-containing hybrid sensor histidine kinase/response regulator	30.4	19.6	43.7
MGA_1868	LOCUS_18670	sequence02:592060..598554(+)	partial			WP_013390216.1	discoidin domain-containing protein	59.0	77.7	25.3
MGA_1898	LOCUS_18970	sequence02:623530..625626(-)	partial			WP_011860848.1	bifunctional diguanylate cyclase/phosphodiesterase	62.3	41.9	41.8
MGA_1899	LOCUS_18980	sequence02:625773..627119(-)	partial			WP_002680024.1	recombinase family protein	96.2	71.6	35.2
MGA_1902	LOCUS_19010	sequence02:628979..629923(-)	partial			WP_000122374.1	MobV family relaxase	72.6	56.9	35.6
MGA_1903	LOCUS_19020	sequence02:630106..630501(-)	partial			WP_001132444.1	replication initiator protein A	89.3	40.5	31.8
MGA_1906	LOCUS_19050	sequence02:632172..632972(+)	partial			WP_035668232.1	helix-turn-helix transcriptional regulator	28.9	73.3	44.2
MGA_1909	LOCUS_19080	sequence02:633847..634194(-)	partial			WP_002368663.1	recombinase family protein	87.0	18.6	48.0
MGA_1911	LOCUS_19100	sequence02:634567..636153(-)	partial			WP_011117537.1	relaxase/mobilization nuclease domain-containing protein	48.3	71.7	26.4
MGA_1918	LOCUS_19170	sequence02:643625..645451(-)	partial			WP_003114406.1	class I SAM-dependent DNA methyltransferase	82.1	63.5	56.2
MGA_1935	LOCUS_19330	sequence03:884..3160(-)	partial			WP_000691497.1	N-acetylmuramoyl-L-alanine amidase family protein	18.1	47.9	37.3
MGA_1940	LOCUS_19380	sequence03:8286..9416(-)	partial			WP_106777216.1	DHHW family protein	98.7	65.0	32.6
MGA_1957	LOCUS_19550	sequence03:26207..27103(+)	partial			WP_011948973.1	M14 family metallopeptidase	97.3	69.3	38.8
MGA_1959	LOCUS_19570	sequence03:27629..28234(+)	partial			WP_010886452.1	amidase domain-containing protein	58.2	37.3	33.6
MGA_1968	LOCUS_19660	sequence03:39960..41336(-)	partial			WP_011037869.1	UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-glutamate epimerase	73.6	75.4	35.7
MGA_1971	LOCUS_19690	sequence03:43987..44862(-)	partial			WP_014206024.1	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	73.5	34.6	28.5
MGA_1982	LOCUS_19800	sequence03:55790..56128(+)	partial			WP_000739250.1	ribonuclease P protein component	67.0	61.0	40.0
MGA_1999	LOCUS_19970	sequence03:73349..74509(-)	partial			WP_072375051.1	AAA family ATPase	71.2	33.7	25.4
MGA_2010	LOCUS_20080	sequence03:81184..82326(-)	partial			WP_072375051.1	AAA family ATPase	71.3	33.3	24.2
MGA_2023	LOCUS_20210	sequence03:96372..100754(+)	partial			WP_001035315.1	pneumococcal surface protein A	12.7	28.4	49.7
MGA_2024	LOCUS_20220	sequence03:101078..101572(+)	partial			WP_000577652.1	helix-turn-helix transcriptional regulator	40.2	46.3	49.3
MGA_2050	LOCUS_20480	sequence03:127771..128748(+)	partial			WP_011836909.1	CPBP family intramembrane metalloprotease	34.5	33.3	35.7
MGA_2059	LOCUS_20570	sequence03:139112..140170(+)	partial			WP_011121496.1	ABC transporter permease subunit	56.0	26.0	27.7
MGA_2063	LOCUS_20610	sequence03:142343..143824(-)	partial			WP_071542382.1	trypsin-like peptidase domain-containing protein	63.3	83.3	38.9
MGA_2106	LOCUS_21040	sequence03:188759..190870(-)	partial			WP_010942721.1	penicillin-binding protein 2	72.8	79.2	31.8
MGA_2113	LOCUS_21110	sequence03:194887..196938(-)	partial			WP_011860926.1	U32 family peptidase	41.4	34.6	48.5
MGA_2121	LOCUS_21190	sequence03:204931..206091(+)	partial			WP_005797457.1	putative Ig domain-containing protein	71.8	58.7	49.8
MGA_2124	LOCUS_21220	sequence03:207944..208519(+)	partial			WP_003814565.1	M23 family metallopeptidase	67.0	39.3	49.6
MGA_2171	LOCUS_21690	sequence03:255529..256041(+)	internal_stop_codon	256039..256041(+)		WP_010963715.1	LacI family DNA-binding transcriptional regulator	97.6	48.3	44.6
MGA_2191	LOCUS_21890	sequence03:275362..275979(-)	partial			WP_003973145.1	TrkA family potassium uptake protein	63.9	58.7	46.6
MGA_2204	LOCUS_22020	sequence03:284606..285748(-)	partial			WP_072375051.1	AAA family ATPase	51.3	23.2	28.0
MGA_2231	LOCUS_22290	sequence03:314707..315828(+)	partial			WP_003229504.1	sn-glycerol-1-phosphate dehydrogenase	61.7	58.4	40.3
MGA_2236	LOCUS_22320	sequence04:927..1835(-)	partial			WP_102374990.1	phosphotransferase	97.7	48.7	35.0
MGA_2245	LOCUS_22410	sequence04:11013..11498(-)	partial			WP_003416641.1	diacylglycerol kinase	76.4	50.6	41.5
MGA_2254	LOCUS_22500	sequence04:17983..18747(+)	partial			WP_009930648.1	AAC(3) family N-acetyltransferase	73.6	75.0	32.4
MGA_2267	LOCUS_22630	sequence04:35873..37720(+)	partial			WP_011460009.1	bifunctional glycogen debranching protein GlgX/4-alpha-glucanotransferase	93.0	51.9	39.2
MGA_2268	LOCUS_22640	sequence04:37761..38642(-)	partial			WP_001830043.1	LCP family protein	70.3	68.0	24.8
MGA_2279	LOCUS_22750	sequence04:48321..49055(-)	partial			WP_000672663.1	stage II sporulation protein D	97.1	72.6	30.9
MGA_2297	LOCUS_22930	sequence04:68699..69334(+)	partial			WP_011460947.1	stage II sporulation protein R	78.7	73.6	40.4
MGA_2309	LOCUS_23050	sequence04:84599..85303(+)	partial			WP_005785272.1	DUF5668 domain-containing protein	73.5	70.2	27.1
MGA_2330	LOCUS_23260	sequence04:104759..105178(+)	partial			WP_012583276.1	CBS domain-containing protein	97.8	46.9	58.1
MGA_2342	LOCUS_23380	sequence04:114070..114957(-)	internal_stop_codon	114070..114072(-)		WP_010966584.1	HAD family hydrolase	76.6	43.4	33.3
MGA_2345	LOCUS_23410	sequence04:116389..117048(+)	partial			WP_002182762.1	4'-phosphopantetheinyl transferase superfamily protein	60.7	64.9	38.7
MGA_2348	LOCUS_23440	sequence04:118717..118965(-)	frameshift,internal_stop_codon	119162..119164(-)	118978,119158	WP_178372834.1	IS256 family transposase	85.4	17.7	60.0
MGA_2351	LOCUS_23470	sequence04:119327..119902(-)	frameshift,internal_stop_codon	119162..119164(-),119327..119329(-)	119158	WP_178372834.1	IS256 family transposase	98.4	47.3	59.0
MGA_2357	LOCUS_23530	sequence04:125734..127446(+)	partial			WP_050752960.1	non-ribosomal peptide synthetase	81.4	23.3	34.7
MGA_2362	LOCUS_23580	sequence04:132471..134846(+)	partial			WP_001255763.1	non-ribosomal peptide synthetase	78.8	12.9	29.3
MGA_2370	LOCUS_23660	sequence04:142775..143551(-)	partial			WP_002679456.1	M23 family metallopeptidase	57.0	41.3	40.8
MGA_2388	LOCUS_23840	sequence04:158480..158788(-)	partial			WP_002557374.1	DNA-binding protein SpoVG	64.7	61.9	36.4
MGA_2389	LOCUS_23850	sequence04:158859..159137(-)	partial			WP_041272752.1	DUF6133 family protein	63.0	76.3	48.3
MGA_2391	LOCUS_23870	sequence04:159624..161195(-)	partial			WP_011391908.1	type IV secretory system conjugative DNA transfer family protein	74.8	57.9	28.9
MGA_2394	LOCUS_23900	sequence04:162194..162928(-)	partial			WP_011462007.1	hypothetical protein	48.4	82.4	41.5
MGA_2399	LOCUS_23950	sequence04:165715..166953(-)	partial			WP_011458828.1	MobP3 family relaxase	44.7	17.5	26.6
MGA_2401	LOCUS_23970	sequence04:167601..168002(-)	internal_stop_codon	167601..167603(-)		WP_103677717.1	MT-A70 family methyltransferase	100.0	68.7	40.4
MGA_2403	LOCUS_23990	sequence04:168633..169049(-)	partial			WP_012640651.1	DUF86 domain-containing protein	71.0	70.9	33.7
MGA_2406	LOCUS_24020	sequence04:170000..171052(-)	partial			WP_011461990.1	DUF3991 domain-containing protein	74.3	52.8	34.1
MGA_2409	LOCUS_24050	sequence04:173381..179713(-)	partial			WP_010774229.1	DEAD/DEAH box helicase family protein	78.0	50.2	43.2
MGA_2417	LOCUS_24130	sequence04:187336..188625(+)	partial			WP_011948726.1	sensor histidine kinase	69.2	69.1	24.3
MGA_2427	LOCUS_24230	sequence04:198996..200111(-)	partial			WP_003579034.1	trigger factor	85.7	70.3	33.3
MGA_2431	LOCUS_24270	sequence04:204350..204631(+)	partial			WP_011986717.1	DUF1294 domain-containing protein	67.7	74.1	50.8
MGA_2440	LOCUS_24360	sequence04:216946..222333(+)	partial			WP_001035315.1	pneumococcal surface protein A	9.8	28.4	52.0
MGA_2442	LOCUS_24380	sequence04:223599..229130(+)	partial			WP_001035315.1	pneumococcal surface protein A	9.5	28.4	52.5
MGA_2443	LOCUS_24390	sequence04:229748..235906(+)	partial			WP_001035315.1	pneumococcal surface protein A	8.6	28.4	53.7
MGA_2455	LOCUS_24510	sequence04:246359..247255(+)	partial			WP_003245023.1	peptidoglycan-N-acetylmuramic acid deacetylase PdaC	62.4	40.0	43.3
MGA_2460	LOCUS_24560	sequence04:249671..250252(-)	partial			WP_011948549.1	flavodoxin family protein	64.8	66.3	32.3
MGA_2468	LOCUS_24630	sequence05:3537..4952(-)	partial			WP_011117010.1	MobA/MobL family protein	60.3	52.7	34.8
MGA_2483	LOCUS_24780	sequence05:20371..21471(-)	partial			WP_011706686.1	glycosyltransferase	29.0	29.1	34.9
MGA_2489	LOCUS_24840	sequence05:28067..28891(+)	partial			WP_015943647.1	SGNH/GDSL hydrolase family protein	68.2	81.8	33.5
MGA_2492	LOCUS_24870	sequence05:32743..33090(+)	partial			WP_005807782.1	NUDIX domain-containing protein	92.2	60.1	60.4
MGA_2505	LOCUS_25000	sequence05:47470..47775(+)	partial			WP_003418414.1	anti-sigma F factor antagonist	80.2	73.0	39.5
MGA_2514	LOCUS_25090	sequence05:54491..54757(-)	partial			WP_005902609.1	ATP synthase F0 subunit C	69.3	68.5	62.3
MGA_2520	LOCUS_25150	sequence05:58975..66135(+)	partial			WP_013390216.1	discoidin domain-containing protein	49.7	74.4	27.1
MGA_2529	LOCUS_25240	sequence05:73748..74590(-)	partial			WP_011861347.1	prephenate dehydratase	96.4	67.8	39.3
MGA_2541	LOCUS_25360	sequence05:84357..91253(-)	partial			WP_000771103.1	choline-binding protein CbpC	4.6	32.0	48.1
MGA_2545	LOCUS_25400	sequence05:95271..96833(-)	partial			WP_011393603.1	response regulator	47.9	46.2	26.6
MGA_2547	LOCUS_25420	sequence05:98893..100236(+)	partial			WP_003722711.1	sugar ABC transporter substrate-binding protein	67.3	68.4	22.7
MGA_2612	LOCUS_26060	sequence06:45591..46616(+)	partial			WP_001077263.1	ABC transporter ATP-binding protein	97.7	49.7	50.0
MGA_2614	LOCUS_26080	sequence06:47749..49374(+)	partial			WP_013224226.1	fumarate reductase/succinate dehydrogenase flavoprotein subunit	66.7	64.3	28.3
MGA_2631	LOCUS_26230	sequence07:9326..10930(+)	partial			WP_173514080.1	glycerophosphodiester phosphodiesterase family protein	17.6	34.9	40.4
MGA_2637	LOCUS_26290	sequence07:18269..23611(+)	partial			WP_001035315.1	pneumococcal surface protein A	9.9	28.4	52.5
MGA_2642	LOCUS_26320	sequence08:2148..8759(+)	partial			WP_001035315.1	pneumococcal surface protein A	8.0	28.4	53.7
MGA_2644	LOCUS_26340	sequence08:10848..12182(-)	partial			WP_013223059.1	extracellular solute-binding protein	64.9	65.0	29.9
MGA_2650	LOCUS_26380	sequence10:2098..2418(-)	partial			WP_011949175.1	plasmid mobilization relaxosome protein MobC	94.3	53.8	48.0
