{
    "type": "genome",
    "identifier": "GCF_014385085.1",
    "organism": "Youxingia wuxianensis",
    "title": "Youxingia wuxianensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014385085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15805310",
        "wgs_master": "JACRTD000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2763678",
        "species_taxid": "2763678",
        "organism_name": "Youxingia wuxianensis",
        "infraspecific_name": "strain=NSJ-64",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/01",
        "asm_name": "ASM1438508v1",
        "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
        "gbrs_paired_asm": "GCA_014385085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/385/085/GCF_014385085.1_ASM1438508v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2660737",
        "genome_size_ungapped": "2660737",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014385085.1-RS_2024_10_16",
        "annotation_date": "2024-10-16",
        "total_gene_count": "2740",
        "protein_coding_gene_count": "2639",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-01",
    "dateModified": "2020-09-01",
    "datePublished": "2020-09-01",
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        "sample_count": 1,
        "sample_organism": [
            "Youxingia wuxianensis"
        ],
        "sample_taxid": [
            "2763678"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Beijing"
        ],
        "sample_host_location_id": [],
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        "sample_ph_range": {
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            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
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    "_dfast": {
        "Total Sequence Length (bp)": "2660737",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "446317",
        "N50 (bp)": "305551",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.6",
        "Number of CDSs": "2677",
        "Average Protein Length": "293.3",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_025146135.1",
                "taxid": 169435,
                "species_taxid": 169435,
                "relation_to_type": "type",
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            },
            {
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                "relation_to_type": "type",
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            },
            {
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            },
            {
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                "accession": "GCA_900078395.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marasmitruncus massiliensis",
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                "taxid": 1944642,
                "species_taxid": 1944642,
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                "matched_fragments": 67,
                "total_fragments": 870,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCA_014385085.1",
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                "matched_fragments": 869,
                "total_fragments": 870,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerotruncus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            {
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                "num_clustered_genomes": 16,
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            {
                "accession": "GCF_900199635.1",
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                "mean_intra_species_ani": "98.56",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000403395.2",
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                "num_clustered_genomes": 7,
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            },
            {
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                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
        "cell_length": null,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
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        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
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        "wuxianensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}