{ "type": "genome", "identifier": "GCF_014396385.1", "organism": "Leucobacter denitrificans", "title": "Leucobacter denitrificans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014396385.1", "bioproject": "PRJNA224116", "biosample": "SAMN15892350", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "683042", "species_taxid": "683042", "organism_name": "Leucobacter denitrificans", "infraspecific_name": "strain=KACC 14055", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/02", "asm_name": "ASM1439638v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_014396385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/396/385/GCF_014396385.1_ASM1439638v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2404302", "genome_size_ungapped": "2404302", "gc_percent": "60.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014396385.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2343", "protein_coding_gene_count": "2250", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-02", "dateModified": "2020-09-02", "datePublished": "2020-09-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter denitrificans" ], "sample_taxid": [ "683042" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.677 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2404302", "Number of Sequences": "1", "Longest Sequences (bp)": "2404302", "N50 (bp)": "2404302", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.0", "Number of CDSs": "2350", "Average Protein Length": "312.2", "Coding Ratio (%)": "91.6", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter denitrificans", "strain": "strain=KACC 14055", "accession": "GCA_014396385.1", "taxid": 683042, "species_taxid": 683042, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 801, "total_fragments": 801, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leucobacter komagatae", "strain": "strain=DSM 8803", "accession": "GCA_006716085.1", "taxid": 55969, "species_taxid": 55969, "relation_to_type": "type", "validated": true, "ani": 79.1134, "matched_fragments": 281, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter aridicollis", "strain": "strain=DSM 17380", "accession": "GCA_013409595.1", "taxid": 283878, "species_taxid": 283878, "relation_to_type": "type", "validated": true, "ani": 79.0662, "matched_fragments": 269, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter aridicollis", "strain": "strain=L-9", "accession": "GCA_016758215.1", "taxid": 283878, "species_taxid": 283878, "relation_to_type": "type", "validated": true, "ani": 79.0083, "matched_fragments": 265, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter triazinivorans", "strain": "strain=JW-1", "accession": "GCA_004208635.1", "taxid": 1784719, "species_taxid": 1784719, "relation_to_type": "type", "validated": true, "ani": 78.6423, "matched_fragments": 238, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 78.5773, "matched_fragments": 217, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 78.4502, "matched_fragments": 234, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter japonicus", "strain": "strain=CBX130", "accession": "GCA_001273855.1", "taxid": 1461259, "species_taxid": 1461259, "relation_to_type": "type", "validated": true, "ani": 78.3083, "matched_fragments": 208, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 78.1265, "matched_fragments": 233, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter exalbidus", "strain": "strain=DSM 22850", "accession": "GCA_017834145.1", "taxid": 662960, "species_taxid": 662960, "relation_to_type": "type", "validated": true, "ani": 78.0048, "matched_fragments": 180, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", "strain": "strain=CIP 111803", "accession": "GCA_910593785.1", "taxid": 2812850, "species_taxid": 2812850, "relation_to_type": "type", "validated": true, "ani": 77.6671, "matched_fragments": 184, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter weissii", "strain": "strain=S27", "accession": "GCA_017565745.1", "taxid": 1983706, "species_taxid": 1983706, "relation_to_type": "type", "validated": true, "ani": 77.4703, "matched_fragments": 148, "total_fragments": 801, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014396385.1", "gtdb_species": "s__Leucobacter denitrificans", "ani": 100.0, "matched_fragments": 801, "total_fragments": 801, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leucobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004208635.1", "gtdb_species": "s__Leucobacter triazinivorans", "ani": 78.7108, "matched_fragments": 239, "total_fragments": 801, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leucobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001482305.1", "gtdb_species": "s__Leucobacter sp001482305", "ani": 78.6651, "matched_fragments": 262, "total_fragments": 801, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leucobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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