{
    "type": "genome",
    "identifier": "GCF_014397005.1",
    "organism": "Kordia aestuariivivens",
    "title": "Kordia aestuariivivens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sungkyunkwan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014397005.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15636642",
        "wgs_master": "JACGWS000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2759037",
        "species_taxid": "2759037",
        "organism_name": "Kordia aestuariivivens",
        "infraspecific_name": "strain=YSTF-M3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/02",
        "asm_name": "ASM1439700v1",
        "asm_submitter": "Sungkyunkwan University",
        "gbrs_paired_asm": "GCA_014397005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/397/005/GCF_014397005.1_ASM1439700v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5464339",
        "genome_size_ungapped": "5464339",
        "gc_percent": "34.000000",
        "replicon_count": "0",
        "scaffold_count": "46",
        "contig_count": "46",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014397005.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4815",
        "protein_coding_gene_count": "4734",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-02",
    "dateModified": "2020-09-02",
    "datePublished": "2020-09-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kordia aestuariivivens"
        ],
        "sample_taxid": [
            "2759037"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Incheon"
        ],
        "sample_host_location_id": [],
        "data_size": "1.517 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5464339",
        "Number of Sequences": "46",
        "Longest Sequences (bp)": "709783",
        "N50 (bp)": "270998",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.1",
        "Number of CDSs": "4707",
        "Average Protein Length": "332.0",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Kordia aestuariivivens",
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                "relation_to_type": "type",
                "validated": true,
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            {
                "organism_name": "Kordia antarctica",
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                "taxid": 1218801,
                "species_taxid": 1218801,
                "relation_to_type": "type",
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                "ani": 83.7123,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordia algicida",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_001005315.1",
                "taxid": 1348245,
                "species_taxid": 1348245,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 971,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordia periserrulae",
                "strain": "strain=DSM 25731",
                "accession": "GCA_003054265.1",
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                "species_taxid": 701523,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordia zhangzhouensis",
                "strain": "strain=MCCC 1A00726",
                "accession": "GCA_001005305.1",
                "taxid": 1620405,
                "species_taxid": 1620405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.929,
                "matched_fragments": 667,
                "total_fragments": 1804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontimicrobium aquaticum",
                "strain": "strain=CAU 1491",
                "accession": "GCA_005047595.1",
                "taxid": 2565367,
                "species_taxid": 2565367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0761,
                "matched_fragments": 125,
                "total_fragments": 1804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum todarodis",
                "strain": "strain=LPB0136",
                "accession": "GCA_001889045.1",
                "taxid": 1850252,
                "species_taxid": 1850252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7194,
                "matched_fragments": 161,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter dokdonensis",
                "strain": "strain=KCTC 12392",
                "accession": "GCA_024362345.1",
                "taxid": 326329,
                "species_taxid": 326329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5671,
                "matched_fragments": 116,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum aquimarinum",
                "strain": "strain=K20-16",
                "accession": "GCA_022478115.1",
                "taxid": 2910675,
                "species_taxid": 2910675,
                "relation_to_type": "type",
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                "ani": 76.5386,
                "matched_fragments": 161,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter septentrionalilitoris",
                "strain": "strain=ANORD1",
                "accession": "GCA_009832745.1",
                "taxid": 2494657,
                "species_taxid": 2494657,
                "relation_to_type": "type",
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                "total_fragments": 1804,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_014397005.1",
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                "matched_fragments": 1802,
                "total_fragments": 1804,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Kordia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Kordia",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000154725.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
            {
                "accession": "GCF_003352465.1",
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                "matched_fragments": 988,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Kordia",
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                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "gram_stain": 0.0,
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    "_genome_taxon": [
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        "aestuariivivens"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}