{ "type": "genome", "identifier": "GCF_014397115.1", "organism": "Vagococcus carniphilus", "title": "Vagococcus carniphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014397115.1", "bioproject": "PRJNA224116", "biosample": "SAMN15892503", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "218144", "species_taxid": "218144", "organism_name": "Vagococcus carniphilus", "infraspecific_name": "strain=ATCC BAA-640", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/02", "asm_name": "ASM1439711v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_014397115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/397/115/GCF_014397115.1_ASM1439711v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3128613", "genome_size_ungapped": "3128613", "gc_percent": "32.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014397115.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3056", "protein_coding_gene_count": "2908", "non_coding_gene_count": "108", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-02", "dateModified": "2020-09-02", "datePublished": "2020-09-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Vagococcus carniphilus" ], "sample_taxid": [ "218144" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.862 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3128613", "Number of Sequences": "3", "Longest Sequences (bp)": "3020833", "N50 (bp)": "3020833", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.7", "Number of CDSs": "2978", "Average Protein Length": "312.8", "Coding Ratio (%)": "89.3", "Number of rRNAs": "20", "Number of tRNAs": "82", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vagococcus carniphilus", "strain": "strain=ATCC BAA-640", "accession": "GCA_014397115.1", "taxid": 218144, "species_taxid": 218144, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1037, "total_fragments": 1041, "ani_threshold": 95, 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