{ "type": "genome", "identifier": "GCF_014397245.1", "organism": "Arenibacter arenosicollis", "title": "Arenibacter arenosicollis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014397245.1", "bioproject": "PRJNA224116", "biosample": "SAMN15699799", "wgs_master": "JACLHY000000000.1", "refseq_category": "reference genome", "taxid": "2762274", "species_taxid": "2762274", "organism_name": "Arenibacter arenosicollis", "infraspecific_name": "strain=BSSL-BM3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/02", "asm_name": "ASM1439724v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_014397245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/397/245/GCF_014397245.1_ASM1439724v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5396743", "genome_size_ungapped": "5396743", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014397245.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4419", "protein_coding_gene_count": "4340", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-02", "dateModified": "2020-09-02", "datePublished": "2020-09-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Arenibacter arenosicollis" ], "sample_taxid": [ "2762274" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Boryeong" ], "sample_host_location_id": [], "data_size": "1.527 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5396743", "Number of Sequences": "77", "Longest Sequences (bp)": "776680", "N50 (bp)": "199582", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.7", "Number of CDSs": "4308", "Average Protein Length": "358.4", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenibacter arenosicollis", "strain": "strain=BSSL-BM3", "accession": "GCA_014397245.1", "taxid": 2762274, "species_taxid": 2762274, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1764, "total_fragments": 1767, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arenibacter hampyeongensis", "strain": "strain=JCM 17788", "accession": "GCA_002909255.1", "taxid": 1028743, "species_taxid": 1028743, "relation_to_type": "type", "validated": true, "ani": 88.8886, "matched_fragments": 1361, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter catalasegens", "strain": "strain=P308H10", "accession": "GCA_002909235.1", "taxid": 2056779, "species_taxid": 2056779, "relation_to_type": "type", "validated": true, "ani": 85.8848, "matched_fragments": 1284, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter echinorum", "strain": "strain=DSM 23522", "accession": "GCA_003259375.1", "taxid": 440515, "species_taxid": 440515, "relation_to_type": "type", "validated": true, "ani": 83.4748, "matched_fragments": 1182, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter algicola", "strain": "strain=TG409", "accession": "GCA_000733925.1", "taxid": 616991, "species_taxid": 616991, "relation_to_type": "type", "validated": true, "ani": 82.5148, "matched_fragments": 1205, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda profundi", "strain": "strain=BC31-3-A3", "accession": "GCA_017313275.1", "taxid": 2915620, "species_taxid": 2915620, "relation_to_type": "type", "validated": true, "ani": 76.6065, "matched_fragments": 112, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 76.471, "matched_fragments": 64, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 76.0877, "matched_fragments": 64, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014397245.1", "gtdb_species": "s__Arenibacter arenosicollis", "ani": 100.0, "matched_fragments": 1764, "total_fragments": 1767, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002909255.1", "gtdb_species": "s__Arenibacter hampyeongensis", "ani": 88.8854, "matched_fragments": 1361, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003259375.1", "gtdb_species": "s__Arenibacter echinorum", "ani": 83.458, "matched_fragments": 1184, "total_fragments": 1767, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000733925.1", "gtdb_species": "s__Arenibacter algicola", "ani": 82.5129, "matched_fragments": 1205, "total_fragments": 1767, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.04", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003201775.1", "gtdb_species": "s__Arenibacter sp003201775", "ani": 82.4912, "matched_fragments": 1115, "total_fragments": 1767, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.356, "cell_length": 0.398, "doubling_h": null, "growth_tmp": 28.333, "optimum_tmp": 24.0, "optimum_ph": 7.25, "genome_size": 5078096.607, 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