{ "type": "genome", "identifier": "GCF_014397255.1", "organism": "Weissella diestrammenae", "title": "Weissella diestrammenae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014397255.1", "bioproject": "PRJNA224116", "biosample": "SAMN15892525", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1162633", "species_taxid": "1162633", "organism_name": "Weissella diestrammenae", "infraspecific_name": "strain=KACC 16890", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/02", "asm_name": "ASM1439725v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_014397255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/397/255/GCF_014397255.1_ASM1439725v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1659381", "genome_size_ungapped": "1659381", "gc_percent": "39.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014397255.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "1658", "protein_coding_gene_count": "1551", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-02", "dateModified": "2020-09-02", "datePublished": "2020-09-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Weissella diestrammenae" ], "sample_taxid": [ "1162633" ], "sample_host_organism": [ "Diestrammena coreana (camel cricket)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.467 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1659381", "Number of Sequences": "1", "Longest Sequences (bp)": "1659381", "N50 (bp)": "1659381", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.4", "Number of CDSs": "1628", "Average Protein Length": "293.2", "Coding Ratio (%)": "86.3", "Number of rRNAs": "15", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Weissella diestrammenae", "strain": "strain=KACC 16890", "accession": "GCA_014397255.1", "taxid": 1162633, "species_taxid": 1162633, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 552, "total_fragments": 553, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Weissella coleopterorum", "strain": "strain=HDW19", "accession": "GCA_011304355.1", "taxid": 2714949, "species_taxid": 2714949, "relation_to_type": "type", "validated": true, "ani": 80.0471, "matched_fragments": 105, "total_fragments": 553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella koreensis", "strain": "strain=KCTC 3621", "accession": "GCA_000277645.1", "taxid": 165096, "species_taxid": 165096, "relation_to_type": "type", "validated": true, "ani": 79.8677, "matched_fragments": 107, "total_fragments": 553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella kandleri", "strain": "strain=DSM 20593", "accession": "GCA_001438705.1", "taxid": 1616, "species_taxid": 1616, "relation_to_type": "type", "validated": true, "ani": 79.1242, "matched_fragments": 90, "total_fragments": 553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella sagaensis", "strain": "strain=X0750", "accession": "GCA_005405285.1", "taxid": 2559928, "species_taxid": 2559928, "relation_to_type": "type", "validated": true, "ani": 78.7273, "matched_fragments": 72, "total_fragments": 553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella bombi", "strain": "strain=DSM 28794", "accession": "GCA_005405505.1", "taxid": 1505725, "species_taxid": 1505725, "relation_to_type": "type", "validated": true, "ani": 78.3114, "matched_fragments": 66, "total_fragments": 553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella bombi", "strain": "strain=R-53094", "accession": "GCA_900094835.1", "taxid": 1505725, "species_taxid": 1505725, "relation_to_type": "type", "validated": true, "ani": 78.2579, "matched_fragments": 67, "total_fragments": 553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella hellenica", "strain": "strain=NBRC 15553", 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"coding_genes": 1717.48, "rRNA16S_genes": 7.2, "tRNA_genes": 74.041, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Weissella", "diestrammenae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }