{ "type": "genome", "identifier": "GCF_014490575.1", "organism": "Corynebacterium zhongnanshanii", "title": "Corynebacterium zhongnanshanii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014490575.1", "bioproject": "PRJNA224116", "biosample": "SAMN15951547", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2768834", "species_taxid": "2768834", "organism_name": "Corynebacterium zhongnanshanii", "infraspecific_name": "strain=zg-320", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/08", "asm_name": "ASM1449057v1", "asm_submitter": "China CDC", "gbrs_paired_asm": "GCA_014490575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/490/575/GCF_014490575.1_ASM1449057v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2206897", "genome_size_ungapped": "2206897", "gc_percent": "61.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014490575.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "1980", "protein_coding_gene_count": "1906", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-08", "dateModified": "2020-09-08", "datePublished": "2020-09-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium zhongnanshanii" ], "sample_taxid": [ "2768834" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai Province" ], "sample_host_location_id": [], "data_size": "0.622 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2206897", "Number of Sequences": "1", "Longest Sequences (bp)": "2206897", "N50 (bp)": "2206897", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "1940", "Average Protein Length": "337.9", "Coding Ratio (%)": "89.1", "Number of rRNAs": "9", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium zhongnanshanii", "strain": "strain=zg-320", "accession": "GCA_014490575.1", "taxid": 2768834, "species_taxid": 2768834, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 735, "total_fragments": 735, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium falsenii", "strain": "strain=FDAARGOS_1494", "accession": "GCA_020099275.1", "taxid": 108486, "species_taxid": 108486, "relation_to_type": "type", "validated": true, "ani": 79.3888, "matched_fragments": 243, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium resistens", "strain": "strain=DSM 45100", "accession": "GCA_000177535.2", "taxid": 258224, "species_taxid": 258224, "relation_to_type": "type", "validated": true, "ani": 79.2491, "matched_fragments": 148, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urogenitale", "strain": "strain=LMM-1652", "accession": "GCA_009026825.1", "taxid": 2487892, "species_taxid": 2487892, "relation_to_type": "type", "validated": true, "ani": 79.232, "matched_fragments": 192, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=NCTC11913", "accession": "GCA_900461185.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0218, "matched_fragments": 252, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=ATCC 43734", "accession": "GCA_001999385.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7893, "matched_fragments": 238, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=ATCC 43734", "accession": "GCA_000163435.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7715, "matched_fragments": 250, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium dentalis", "strain": "strain=Marseille-P4122", "accession": "GCA_900232865.1", "taxid": 2014528, "species_taxid": 2014528, "relation_to_type": "type", "validated": true, "ani": 78.594, "matched_fragments": 212, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium suicordis", "strain": "strain=DSM 45110", "accession": "GCA_015351405.1", "taxid": 203264, "species_taxid": 203264, "relation_to_type": "type", "validated": true, "ani": 78.5578, "matched_fragments": 208, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium heidelbergense", "strain": "strain=DSM 104638", "accession": "GCA_003285565.1", "taxid": 2055947, "species_taxid": 2055947, "relation_to_type": "type", "validated": true, "ani": 77.9519, "matched_fragments": 151, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium atypicum", "strain": "strain=R2070", "accession": "GCA_000732945.1", "taxid": 191610, "species_taxid": 191610, "relation_to_type": "type", "validated": true, "ani": 77.38, "matched_fragments": 69, "total_fragments": 735, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014490575.1", "gtdb_species": "s__Corynebacterium sp014490575", "ani": 100.0, "matched_fragments": 735, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "97.50", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.97", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCA_000525655.1", "gtdb_species": "s__Corynebacterium falsenii", "ani": 79.4539, "matched_fragments": 243, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009026825.1", "gtdb_species": "s__Corynebacterium sp009026825", "ani": 79.1933, "matched_fragments": 190, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001807485.1", "gtdb_species": "s__Corynebacterium sp001807485", "ani": 79.1838, "matched_fragments": 257, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.75", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000738175.1", "gtdb_species": "s__Corynebacterium jeikeium_C", "ani": 79.1725, "matched_fragments": 264, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000177535.2", "gtdb_species": "s__Corynebacterium resistens", "ani": 79.142, "matched_fragments": 147, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000738265.1", "gtdb_species": "s__Corynebacterium jeikeium_A", "ani": 79.1099, "matched_fragments": 246, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.92", "min_intra_species_ani": "97.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_019114175.1", "gtdb_species": "s__Corynebacterium gallistercoris", "ani": 78.8424, "matched_fragments": 221, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000163435.1", "gtdb_species": "s__Corynebacterium jeikeium", "ani": 78.7892, "matched_fragments": 249, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "96.00", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_900232865.1", "gtdb_species": "s__Corynebacterium dentalis", "ani": 78.594, "matched_fragments": 212, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.56", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015351405.1", "gtdb_species": "s__Corynebacterium sp015351405", "ani": 78.5776, "matched_fragments": 207, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003285565.1", "gtdb_species": "s__Corynebacterium heidelbergense", "ani": 77.9519, "matched_fragments": 151, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.29", "min_intra_species_ani": "96.29", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019120175.1", "gtdb_species": "s__Corynebacterium faecigallinarum", "ani": 77.5385, "matched_fragments": 203, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000732945.1", "gtdb_species": "s__Corynebacterium atypicum", "ani": 77.4014, "matched_fragments": 69, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002101885.1", "gtdb_species": "s__Mycobacterium senuense", "ani": 76.3479, "matched_fragments": 50, "total_fragments": 735, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.275, "cell_length": 0.068, "doubling_h": -0.089, "growth_tmp": 35.111, "optimum_tmp": 35.173, "optimum_ph": 7.292, "genome_size": 2639223.511, "gc_content": 59.791, "coding_genes": 2390.094, "rRNA16S_genes": 4.282, "tRNA_genes": 52.979, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.75, "facultative_respiration": 0.231, "anaerobic_respiration": 0.063, "aerobic_respiration": 0.705, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.985, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.014, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Corynebacterium", "zhongnanshanii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }