{
    "type": "genome",
    "identifier": "GCF_014518315.1",
    "organism": "Taishania pollutisoli",
    "title": "Taishania pollutisoli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zaozhuang University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014518315.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15916002",
        "wgs_master": "JACVEL000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2766479",
        "species_taxid": "2766479",
        "organism_name": "Taishania pollutisoli",
        "infraspecific_name": "strain=CZZ-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/09",
        "asm_name": "ASM1451831v1",
        "asm_submitter": "Zaozhuang University",
        "gbrs_paired_asm": "GCA_014518315.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/518/315/GCF_014518315.1_ASM1451831v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3760583",
        "genome_size_ungapped": "3760583",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "51",
        "contig_count": "51",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014518315.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3250",
        "protein_coding_gene_count": "3195",
        "non_coding_gene_count": "44",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-09",
    "dateModified": "2020-09-09",
    "datePublished": "2020-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Taishania pollutisoli"
        ],
        "sample_taxid": [
            "2766479"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Tiashan Mountain"
        ],
        "sample_host_location_id": [],
        "data_size": "1.063 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3760583",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "757305",
        "N50 (bp)": "378580",
        "Gap Ratio (%)": "0.000106",
        "GCcontent (%)": "41.5",
        "Number of CDSs": "3173",
        "Average Protein Length": "353.1",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Taishania pollutisoli",
                "strain": "strain=CZZ-1",
                "accession": "GCA_014518315.1",
                "taxid": 2766479,
                "species_taxid": 2766479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1228,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fluviicola taffensis",
                "strain": "strain=DSM 16823",
                "accession": "GCA_000194605.1",
                "taxid": 191579,
                "species_taxid": 191579,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.993,
                "matched_fragments": 69,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fluviicola chungangensis",
                "strain": "strain=MAH-3",
                "accession": "GCA_007558725.1",
                "taxid": 2597671,
                "species_taxid": 2597671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8821,
                "matched_fragments": 82,
                "total_fragments": 1231,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014518315.1",
                "gtdb_species": "s__Taishania pollutisoli",
                "ani": 100.0,
                "matched_fragments": 1228,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Taishania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002409405.1",
                "gtdb_species": "s__Taishania sp002409405",
                "ani": 86.0047,
                "matched_fragments": 960,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Taishania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017984635.1",
                "gtdb_species": "s__M0103 sp017984635",
                "ani": 77.4421,
                "matched_fragments": 54,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__M0103",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903945495.1",
                "gtdb_species": "s__M0103 sp903945495",
                "ani": 77.32,
                "matched_fragments": 58,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__M0103",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_007558725.1",
                "gtdb_species": "s__Fluviicola chungangensis",
                "ani": 76.9062,
                "matched_fragments": 81,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003856375.1",
                "gtdb_species": "s__Fluviicola amylolytica",
                "ani": 76.878,
                "matched_fragments": 95,
                "total_fragments": 1231,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Taishania",
        "pollutisoli"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}