{ "type": "genome", "identifier": "GCF_014529705.1", "organism": "Bradyrhizobium campsiandrae", "title": "Bradyrhizobium campsiandrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidade Federal de Lavras", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014529705.1", "bioproject": "PRJNA224116", "biosample": "SAMN14291063", "wgs_master": "JAANIH000000000.1", "refseq_category": "na", "taxid": "1729892", "species_taxid": "1729892", "organism_name": "Bradyrhizobium campsiandrae", "infraspecific_name": "strain=INPA 394B", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1452970v1", "asm_submitter": "Universidade Federal de Lavras", "gbrs_paired_asm": "GCA_014529705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/529/705/GCF_014529705.1_ASM1452970v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9084813", "genome_size_ungapped": "9084614", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "481", "contig_count": "481", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014529705.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "8764", "protein_coding_gene_count": "8425", "non_coding_gene_count": "56", "pubmed_id": "32857180" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium campsiandrae" ], "sample_taxid": [ "1729892" ], "sample_host_organism": [ "Campsiandra laurifolia Benth" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "2.541 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9084813", "Number of Sequences": "481", "Longest Sequences (bp)": "267075", "N50 (bp)": "110456", "Gap Ratio (%)": "0.002190", "GCcontent (%)": "63.6", "Number of CDSs": "8400", "Average Protein Length": "306.0", "Coding Ratio (%)": "84.9", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium campsiandrae", "strain": "strain=INPA 394B", "accession": "GCA_014529705.1", "taxid": 1729892, "species_taxid": 1729892, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2902, "total_fragments": 2912, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bradyrhizobium manausense", "strain": "strain=BR 3351", "accession": "GCA_001440035.1", "taxid": 989370, "species_taxid": 989370, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9497, "matched_fragments": 1844, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangzhouense", "strain": "strain=CCBAU 51670", "accession": "GCA_004114955.1", "taxid": 1325095, "species_taxid": 1325095, "relation_to_type": "type", "validated": true, "ani": 88.9229, "matched_fragments": 1881, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium rifense", "strain": "strain=CTAW71", "accession": "GCA_008123425.1", "taxid": 515499, "species_taxid": 515499, "relation_to_type": "type", "validated": true, "ani": 88.841, "matched_fragments": 1978, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangdongense", "strain": "strain=CGMCC 1.15034", "accession": "GCA_014640515.1", "taxid": 1325090, "species_taxid": 1325090, "relation_to_type": "type", "validated": true, "ani": 88.7436, "matched_fragments": 1908, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangdongense", "strain": "strain=CCBAU 51649", "accession": "GCA_004114975.1", "taxid": 1325090, "species_taxid": 1325090, "relation_to_type": "type", "validated": true, "ani": 88.7267, "matched_fragments": 1931, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cytisi", "strain": "strain=CTAW11", "accession": "GCA_008123515.1", "taxid": 515489, "species_taxid": 515489, "relation_to_type": "type", "validated": true, "ani": 88.6662, "matched_fragments": 1867, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium stylosanthis", "strain": "strain=BR 446", "accession": "GCA_001641335.1", "taxid": 1803665, "species_taxid": 1803665, "relation_to_type": "type", "validated": true, "ani": 88.0468, "matched_fragments": 1896, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium huanghuaihaiense", "strain": "strain=CGMCC 1.10948", "accession": "GCA_007830635.1", "taxid": 990078, "species_taxid": 990078, "relation_to_type": "type", "validated": true, "ani": 87.9913, "matched_fragments": 1915, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 87.9774, "matched_fragments": 1931, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA110", "accession": "GCA_000011365.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 87.9618, "matched_fragments": 1920, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 87.8472, "matched_fragments": 1871, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 87.795, "matched_fragments": 1784, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 87.6861, "matched_fragments": 1894, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 87.5552, "matched_fragments": 1788, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium forestalis", "strain": "strain=INPA54B", "accession": "GCA_002795245.1", "taxid": 1419263, "species_taxid": 1419263, "relation_to_type": "type", "validated": true, "ani": 87.5098, "matched_fragments": 1797, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 87.427, "matched_fragments": 1833, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium amphicarpaeae", "strain": "strain=39S1MB", "accession": "GCA_002266435.2", "taxid": 1404768, "species_taxid": 1404768, "relation_to_type": "type", "validated": true, "ani": 87.3657, "matched_fragments": 1815, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium frederickii", "strain": "strain=CNPSo 3426", "accession": "GCA_004570865.1", "taxid": 2560054, "species_taxid": 2560054, "relation_to_type": "type", "validated": true, "ani": 87.3483, "matched_fragments": 1787, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", "taxid": 2755406, "species_taxid": 2755406, "relation_to_type": "type", "validated": true, "ani": 87.0839, "matched_fragments": 1795, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CCBAU 15774", "accession": "GCA_021044685.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 87.0458, "matched_fragments": 1779, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.782, "matched_fragments": 1455, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 82.6314, "matched_fragments": 1371, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 82.6254, "matched_fragments": 1370, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 78.0645, "matched_fragments": 434, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium binae", "strain": "strain=BLR195", "accession": "GCA_017357225.1", "taxid": 1138190, "species_taxid": 1138190, "relation_to_type": "type", "validated": true, "ani": 76.7104, "matched_fragments": 343, "total_fragments": 2912, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014529705.1", "gtdb_species": "s__Bradyrhizobium campsiandrae", "ani": 100.0, "matched_fragments": 2903, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_015291645.1", "gtdb_species": "s__Bradyrhizobium sp015291645", "ani": 90.0391, "matched_fragments": 1940, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015291665.1", "gtdb_species": "s__Bradyrhizobium sp015291665", "ani": 89.11, "matched_fragments": 1822, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017872875.1", "gtdb_species": "s__Bradyrhizobium sp017872875", "ani": 89.0229, "matched_fragments": 1896, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001440035.1", "gtdb_species": "s__Bradyrhizobium manausense", "ani": 88.9542, "matched_fragments": 1842, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004114955.1", "gtdb_species": "s__Bradyrhizobium guangzhouense", "ani": 88.9176, "matched_fragments": 1882, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000473045.1", "gtdb_species": "s__Bradyrhizobium sp000473045", "ani": 88.7371, "matched_fragments": 1870, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115265.1", "gtdb_species": "s__Bradyrhizobium sp900115265", "ani": 88.5556, "matched_fragments": 1800, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018129685.1", "gtdb_species": "s__Bradyrhizobium manausense_D", "ani": 88.4791, "matched_fragments": 1884, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113735.1", "gtdb_species": "s__Bradyrhizobium sp900113735", "ani": 88.1477, "matched_fragments": 1704, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018130825.1", "gtdb_species": "s__Bradyrhizobium liaoningense_B", "ani": 88.122, "matched_fragments": 1889, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018130765.1", "gtdb_species": "s__Bradyrhizobium iriomotense_A", "ani": 88.0686, "matched_fragments": 1891, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007830635.1", "gtdb_species": "s__Bradyrhizobium huanghuaihaiense", "ani": 87.9833, "matched_fragments": 1916, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000011365.1", "gtdb_species": "s__Bradyrhizobium diazoefficiens", "ani": 87.9583, "matched_fragments": 1921, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_004571025.1", "gtdb_species": "s__Bradyrhizobium niftali", "ani": 87.8607, "matched_fragments": 1869, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018130245.1", "gtdb_species": "s__Bradyrhizobium japonicum_F", "ani": 87.6724, "matched_fragments": 1789, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002776695.1", "gtdb_species": "s__Bradyrhizobium nitroreducens", "ani": 87.6659, "matched_fragments": 1898, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015291725.1", "gtdb_species": "s__Bradyrhizobium japonicum_D", "ani": 87.2324, "matched_fragments": 1835, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.2113, "mean_intra_species_ani": "95.51", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_008933495.1", "gtdb_species": "s__Pseudorhodoplanes sp008933495", "ani": 78.1323, "matched_fragments": 292, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudorhodoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019084245.1", "gtdb_species": "s__Hoeflea sp019084245", "ani": 76.8085, "matched_fragments": 251, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Hoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_014359905.1", "gtdb_species": "s__Hoeflea sp014359905", "ani": 76.7539, "matched_fragments": 295, "total_fragments": 2912, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Hoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.132, "cell_length": 0.272, "doubling_h": 1.189, "growth_tmp": 28.766, "optimum_tmp": 28.773, "optimum_ph": 7.035, "genome_size": 8573557.767, "gc_content": 63.651, "coding_genes": 7833.366, "rRNA16S_genes": 1.416, "tRNA_genes": 52.57, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.071, "aerobic_respiration": 0.928, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bradyrhizobium", "campsiandrae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }