{
    "type": "genome",
    "identifier": "GCF_014529945.1",
    "organism": "Chitinophaga varians",
    "title": "Chitinophaga varians",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "King Mongkut's Institute of Technology Ladkraabang",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014529945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16077907",
        "wgs_master": "JACVFB000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2202339",
        "species_taxid": "2202339",
        "organism_name": "Chitinophaga varians",
        "infraspecific_name": "strain=KACC 19415",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/13",
        "asm_name": "ASM1452994v1",
        "asm_submitter": "King Mongkut's Institute of Technology Ladkraabang",
        "gbrs_paired_asm": "GCA_014529945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/529/945/GCF_014529945.1_ASM1452994v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8704955",
        "genome_size_ungapped": "8704955",
        "gc_percent": "49.500000",
        "replicon_count": "0",
        "scaffold_count": "65",
        "contig_count": "65",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014529945.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "7026",
        "protein_coding_gene_count": "6937",
        "non_coding_gene_count": "78",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-13",
    "dateModified": "2020-09-13",
    "datePublished": "2020-09-13",
    "_annotation": {
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        "sample_organism": [
            "Chitinophaga varians"
        ],
        "sample_taxid": [
            "2202339"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "2.469 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8704955",
        "Number of Sequences": "65",
        "Longest Sequences (bp)": "1983272",
        "N50 (bp)": "1421365",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.3",
        "Number of CDSs": "6859",
        "Average Protein Length": "373.9",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Chitinophaga varians",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Chitinophaga fulva",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2993,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chitinophaga oryzae",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Chitinophaga eiseniae",
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                "species_taxid": 634771,
                "relation_to_type": "type",
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                "matched_fragments": 2113,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chitinophaga qingshengii",
                "strain": "strain=JCM 30026",
                "accession": "GCA_014529935.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chitinophaga hostae",
                "strain": "strain=2R12",
                "accession": "GCA_018224885.1",
                "taxid": 2831022,
                "species_taxid": 2831022,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            }
        ],
        "cc_result": {
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        },
        "gtdb_result": [
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                "accession": "GCF_014529945.1",
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                "matched_fragments": 2881,
                "total_fragments": 2884,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012641275.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012516355.1",
                "gtdb_species": "s__Chitinophaga sp012516355",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga",
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                "mean_intra_species_ani": "99.48",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "varians"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}