{ "type": "genome", "identifier": "GCF_014534785.1", "organism": "Aquisalinus flavus", "title": "Aquisalinus flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Sci-Tech University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014534785.1", "bioproject": "PRJNA224116", "biosample": "SAMN16086044", "wgs_master": "JACVVO000000000.1", "refseq_category": "na", "taxid": "1526572", "species_taxid": "1526572", "organism_name": "Aquisalinus flavus", "infraspecific_name": "strain=D11M-2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/14", "asm_name": "ASM1453478v1", "asm_submitter": "Zhejiang Sci-Tech University", "gbrs_paired_asm": "GCA_014534785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/534/785/GCF_014534785.1_ASM1453478v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3272810", "genome_size_ungapped": "3272310", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014534785.1-RS_2024_04_04", "annotation_date": "2024-04-04", "total_gene_count": "3039", "protein_coding_gene_count": "2979", "non_coding_gene_count": "48", "pubmed_id": "26843074" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-14", "dateModified": "2020-09-14", "datePublished": "2020-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquisalinus flavus" ], "sample_taxid": [ "1526572" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai Province" ], "sample_host_location_id": [], "data_size": "0.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3272810", "Number of Sequences": "7", "Longest Sequences (bp)": "1665537", "N50 (bp)": "1665537", "Gap Ratio (%)": "0.015277", "GCcontent (%)": "61.8", "Number of CDSs": "3006", "Average Protein Length": "326.7", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquisalinus flavus", "strain": "strain=D11M-2", "accession": "GCA_014534785.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1088, "total_fragments": 1088, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquisalinus flavus", "strain": "strain=D11M-2", "accession": "GCA_022559625.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", "validated": true, "ani": 99.9985, "matched_fragments": 1044, "total_fragments": 1088, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquisalinus flavus", "strain": "strain=CGMCC 1.12921", "accession": "GCA_014640095.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", "validated": true, "ani": 99.9981, "matched_fragments": 1088, "total_fragments": 1088, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aquisalinus luteolus", "strain": "strain=NH6-79", "accession": "GCA_009712425.2", "taxid": 1566827, "species_taxid": 1566827, "relation_to_type": "type", "validated": true, "ani": 85.9565, "matched_fragments": 895, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus luteolus", "strain": "strain=CGMCC 1.14984", "accession": "GCA_014640455.1", "taxid": 1566827, "species_taxid": 1566827, "relation_to_type": "type", "validated": true, "ani": 85.9534, "matched_fragments": 902, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 76.9131, "matched_fragments": 139, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 76.2516, "matched_fragments": 101, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 76.2386, "matched_fragments": 91, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 76.002, "matched_fragments": 115, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014640095.1", "gtdb_species": "s__Aquisalinus flavus", "ani": 99.9981, "matched_fragments": 1088, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Aquisalinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_009712425.2", "gtdb_species": "s__Aquisalinus luteolus", "ani": 85.9462, "matched_fragments": 896, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Aquisalinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000733125.1", "gtdb_species": "s__Parvularcula oceani", "ani": 77.4647, "matched_fragments": 259, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Parvularcula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900199215.1", "gtdb_species": "s__Amphiplicatus metriothermophilus", "ani": 77.2065, "matched_fragments": 184, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Amphiplicatus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014199615.1", "gtdb_species": "s__Parvularcula dongshanensis", "ani": 77.2053, "matched_fragments": 161, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Parvularcula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002943565.1", "gtdb_species": "s__Marinicaulis flavus", "ani": 77.1657, "matched_fragments": 210, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013085255.1", "gtdb_species": "s__Parvularcula mediterranea", "ani": 77.0771, "matched_fragments": 146, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Parvularcula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001657385.1", "gtdb_species": "s__Marinicaulis sp001657385", "ani": 77.0459, "matched_fragments": 210, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001426945.1", "gtdb_species": "s__Pseudolabrys sp001426945", "ani": 76.9274, "matched_fragments": 111, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003399445.1", "gtdb_species": "s__Parvularcula sp003399445", "ani": 76.9199, "matched_fragments": 189, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Parvularcula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002704915.1", "gtdb_species": "s__Marinicaulis sp002704915", "ani": 76.6177, "matched_fragments": 174, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002869065.1", "gtdb_species": "s__Rhodobium sp002869065", "ani": 76.482, "matched_fragments": 144, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhodobiaceae;g__Rhodobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002088275.1", "gtdb_species": "s__Jiella sp002088275", "ani": 76.3022, "matched_fragments": 156, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Jiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002700095.1", "gtdb_species": "s__Jiella sp002700095", "ani": 76.2441, "matched_fragments": 133, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Jiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003259195.1", "gtdb_species": "s__Paracoccus sediminilitoris", "ani": 76.2341, "matched_fragments": 79, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.17", "min_intra_species_ani": "95.17", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018241335.1", "gtdb_species": "s__Palsa-881 sp018241335", "ani": 76.1862, "matched_fragments": 113, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Palsa-881", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Aquisalinus", "flavus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }