{ "type": "genome", "identifier": "GCF_014595945.1", "organism": "Alkalibacillus aidingensis", "title": "Alkalibacillus aidingensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan institute of microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014595945.1", "bioproject": "PRJNA224116", "biosample": "SAMN15345801", "wgs_master": "JABXWU000000000.1", "refseq_category": "reference genome", "taxid": "2747607", "species_taxid": "2747607", "organism_name": "Alkalibacillus aidingensis", "infraspecific_name": "strain=YIM 98829", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/15", "asm_name": "ASM1459594v1", "asm_submitter": "Yunnan institute of microbiology", "gbrs_paired_asm": "GCA_014595945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/595/945/GCF_014595945.1_ASM1459594v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2843321", "genome_size_ungapped": "2843192", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014595945.1-RS_2024_10_26", "annotation_date": "2024-10-26", "total_gene_count": "2929", "protein_coding_gene_count": "2836", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-15", "dateModified": "2020-09-15", "datePublished": "2020-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Alkalibacillus aidingensis" ], "sample_taxid": [ "2747607" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: XinJiang" ], "sample_host_location_id": [], "data_size": "0.806 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2843321", "Number of Sequences": "25", "Longest Sequences (bp)": "998503", "N50 (bp)": "432894", "Gap Ratio (%)": "0.004537", "GCcontent (%)": "38.0", "Number of CDSs": "2871", "Average Protein Length": "284.6", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alkalibacillus aidingensis", "strain": "strain=YIM 98829", "accession": "GCA_014595945.1", "taxid": 2747607, "species_taxid": 2747607, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 934, "total_fragments": 935, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alkalibacillus haloalkaliphilus", "strain": "strain=NBRC 103110", "accession": "GCA_007991275.1", "taxid": 94136, "species_taxid": 94136, "relation_to_type": "type", "validated": true, "ani": 78.4716, "matched_fragments": 251, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalibacillus almallahensis", "strain": "strain=CECT 8373", "accession": "GCA_011761495.1", "taxid": 1379154, "species_taxid": 1379154, "relation_to_type": "type", "validated": true, "ani": 77.7079, "matched_fragments": 155, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halalkalibacillus halophilus", "strain": "strain=DSM 18494", "accession": "GCA_000423105.1", "taxid": 392827, "species_taxid": 392827, "relation_to_type": "type", "validated": true, "ani": 77.5703, "matched_fragments": 136, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Piscibacillus halophilus", "strain": "strain=DSM 21633", "accession": "GCA_900110685.1", "taxid": 571933, "species_taxid": 571933, "relation_to_type": "type", "validated": true, "ani": 77.4812, "matched_fragments": 133, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenuibacillus multivorans", "strain": "strain=CGMCC 1.3442", "accession": "GCA_900103915.1", "taxid": 237069, "species_taxid": 237069, "relation_to_type": "type", "validated": true, "ani": 77.2822, "matched_fragments": 138, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus sediminis", "strain": "strain=BH258", "accession": "GCA_005870085.1", "taxid": 2574734, "species_taxid": 2574734, "relation_to_type": "type", "validated": true, "ani": 77.2416, "matched_fragments": 60, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenuibacillus multivorans", "strain": "strain=NBRC 100370", "accession": "GCA_007989445.1", "taxid": 237069, "species_taxid": 237069, "relation_to_type": "type", "validated": true, "ani": 77.1269, "matched_fragments": 135, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allobacillus salarius", "strain": "strain=SKP4-8", "accession": "GCA_007559425.1", "taxid": 1955272, "species_taxid": 1955272, "relation_to_type": "type", "validated": true, "ani": 77.0779, "matched_fragments": 86, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allobacillus saliphilus", "strain": "strain=SKP8-2", "accession": "GCA_018138385.1", "taxid": 2912308, "species_taxid": 2912308, "relation_to_type": "type", "validated": true, "ani": 77.0047, "matched_fragments": 83, "total_fragments": 935, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014595945.1", "gtdb_species": "s__Alkalibacillus sp014595945", "ani": 100.0, "matched_fragments": 934, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007991275.1", "gtdb_species": "s__Alkalibacillus haloalkaliphilus", "ani": 78.4564, "matched_fragments": 252, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000269905.1", "gtdb_species": "s__Alkalibacillus haloalkaliphilus_A", "ani": 78.3847, "matched_fragments": 238, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011761495.1", "gtdb_species": "s__Alkalibacillus almallahensis", "ani": 77.7028, "matched_fragments": 153, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003843875.1", "gtdb_species": "s__Aquisalibacillus elongatus", "ani": 77.5951, "matched_fragments": 133, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Aquisalibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423105.1", "gtdb_species": "s__Halalkalibacillus halophilus", "ani": 77.5887, "matched_fragments": 136, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Halalkalibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110685.1", "gtdb_species": "s__Piscibacillus halophilus", "ani": 77.4812, "matched_fragments": 133, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Piscibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "99.37", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004402015.1", "gtdb_species": "s__Filobacillus milosensis", "ani": 77.4492, "matched_fragments": 147, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Filobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103915.1", "gtdb_species": "s__Tenuibacillus multivorans", "ani": 77.2645, "matched_fragments": 139, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Tenuibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005870085.1", "gtdb_species": "s__BH258 sp005870085", "ani": 77.1945, "matched_fragments": 66, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__BH258", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007559425.1", "gtdb_species": "s__Allobacillus sp007559425", "ani": 77.0779, "matched_fragments": 86, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Allobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018138385.1", "gtdb_species": "s__Allobacillus sp018138385", "ani": 77.0047, "matched_fragments": 83, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Allobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.522, "cell_length": 0.551, "doubling_h": null, "growth_tmp": 32.5, "optimum_tmp": 33.812, "optimum_ph": 9.0, "genome_size": 2908057.0, "gc_content": 37.1, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.666, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Alkalibacillus", "aidingensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }