{ "type": "genome", "identifier": "GCF_014596935.1", "organism": "Aestuariibaculum suncheonense", "title": "Aestuariibaculum suncheonense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014596935.1", "bioproject": "PRJNA224116", "biosample": "SAMN16078603", "wgs_master": "JACVXC000000000.1", "refseq_category": "reference genome", "taxid": "1028745", "species_taxid": "1028745", "organism_name": "Aestuariibaculum suncheonense", "infraspecific_name": "strain=SC17", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/15", "asm_name": "ASM1459693v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_014596935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/596/935/GCF_014596935.1_ASM1459693v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4037004", "genome_size_ungapped": "4036294", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014596935.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3337", "protein_coding_gene_count": "3256", "non_coding_gene_count": "59", "pubmed_id": "22427453" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-15", "dateModified": "2020-09-15", "datePublished": "2020-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariibaculum suncheonense" ], "sample_taxid": [ "1028745" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.136 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4037004", "Number of Sequences": "86", "Longest Sequences (bp)": "1402262", "N50 (bp)": "668623", "Gap Ratio (%)": "0.017587", "GCcontent (%)": "35.3", "Number of CDSs": "3266", "Average Protein Length": "370.7", "Coding Ratio (%)": "90.0", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariibaculum suncheonense", "strain": "strain=SC17", "accession": "GCA_014596935.1", "taxid": 1028745, "species_taxid": 1028745, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1332, 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"below_threshold" }, { "organism_name": "Algibacter lectus", "strain": "strain=DSM 15365", "accession": "GCA_900112395.1", "taxid": 221126, "species_taxid": 221126, "relation_to_type": "type", "validated": true, "ani": 78.3726, "matched_fragments": 340, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile fucanivorans", "strain": "strain=DSM 18792", "accession": "GCA_004341235.1", "taxid": 264023, "species_taxid": 264023, "relation_to_type": "type", "validated": true, "ani": 78.3138, "matched_fragments": 392, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 78.1086, "matched_fragments": 309, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter 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"GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.8102, "matched_fragments": 302, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter sediminis", "strain": "strain=DSL-48", "accession": "GCA_003258355.1", "taxid": 2219045, "species_taxid": 2219045, "relation_to_type": "type", "validated": true, "ani": 77.7913, "matched_fragments": 293, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.3604, "matched_fragments": 248, "total_fragments": 1332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 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