{ "type": "genome", "identifier": "GCF_014596945.1", "organism": "Aestuariibaculum sediminum", "title": "Aestuariibaculum sediminum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014596945.1", "bioproject": "PRJNA224116", "biosample": "SAMN16078551", "wgs_master": "JACVXB000000000.1", "refseq_category": "reference genome", "taxid": "2770637", "species_taxid": "2770637", "organism_name": "Aestuariibaculum sediminum", "infraspecific_name": "strain=TT11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/15", "asm_name": "ASM1459694v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_014596945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/596/945/GCF_014596945.1_ASM1459694v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4043315", "genome_size_ungapped": "4042396", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014596945.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3392", "protein_coding_gene_count": "3317", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-15", "dateModified": "2020-09-15", "datePublished": "2020-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariibaculum sediminum" ], "sample_taxid": [ "2770637" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.134 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4043315", "Number of Sequences": "21", "Longest Sequences (bp)": "1102551", "N50 (bp)": "604431", "Gap Ratio (%)": "0.022729", "GCcontent (%)": "34.2", "Number of CDSs": "3318", "Average Protein Length": "364.3", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariibaculum sediminum", "strain": "strain=TT11", "accession": "GCA_014596945.1", "taxid": 2770637, "species_taxid": 2770637, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1335, "total_fragments": 1337, 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"organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 78.3163, "matched_fragments": 365, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana agarivorans", "strain": "strain=JW-26", "accession": "GCA_001642835.1", "taxid": 481183, "species_taxid": 481183, "relation_to_type": "type", "validated": true, "ani": 78.0785, "matched_fragments": 302, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.8549, "matched_fragments": 294, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", 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