{ "type": "genome", "identifier": "GCF_014621695.1", "organism": "Streptomyces xanthii", "title": "Streptomyces xanthii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of Life Science,Hunan University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014621695.1", "bioproject": "PRJNA224116", "biosample": "SAMN15929880", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2768069", "species_taxid": "2768069", "organism_name": "Streptomyces xanthii", "infraspecific_name": "strain=CRXT-Y-14", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/15", "asm_name": "ASM1462169v1", "asm_submitter": "School of Life Science,Hunan University of Science and Technology", "gbrs_paired_asm": "GCA_014621695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/621/695/GCF_014621695.1_ASM1462169v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8354710", "genome_size_ungapped": "8354710", "gc_percent": "72.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014621695.1-RS_2024_10_26", "annotation_date": "2024-10-26", "total_gene_count": "7618", "protein_coding_gene_count": "7452", "non_coding_gene_count": "92", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-15", "dateModified": "2020-09-15", "datePublished": "2020-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces xanthii" ], "sample_taxid": [ "2768069" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiangtan City,Hunan Province" ], "sample_host_location_id": [], "data_size": "2.222 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8354710", "Number of Sequences": "3", "Longest Sequences (bp)": "7867709", "N50 (bp)": "7867709", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "7647", "Average Protein Length": "325.2", "Coding Ratio (%)": "89.3", "Number of rRNAs": "21", "Number of tRNAs": "85", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces xanthii", "strain": "strain=CRXT-Y-14", "accession": "GCA_014621695.1", "taxid": 2768069, "species_taxid": 2768069, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2782, "total_fragments": 2783, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces silaceus", "strain": "strain=NRRL B-24166", "accession": "GCA_001419745.1", "taxid": 545123, "species_taxid": 545123, "relation_to_type": "type", "validated": true, "ani": 83.5332, "matched_fragments": 1479, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces atriruber", "strain": "strain=NRRL B-24165", "accession": "GCA_001418325.1", "taxid": 545121, "species_taxid": 545121, "relation_to_type": "type", "validated": true, "ani": 83.3409, "matched_fragments": 1447, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alfalfae", "strain": "strain=XY25", "accession": "GCA_004212445.1", "taxid": 1642299, "species_taxid": 1642299, "relation_to_type": "type", "validated": true, "ani": 83.0722, "matched_fragments": 1509, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces solaniscabiei", "strain": "strain=FS70", "accession": "GCA_020312315.1", "taxid": 2683255, "species_taxid": 2683255, "relation_to_type": "type", "validated": true, "ani": 82.8836, "matched_fragments": 1552, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spectabilis", "strain": "strain=KCTC9218", "accession": "GCA_022698305.1", "taxid": 68270, "species_taxid": 68270, "relation_to_type": "type", "validated": true, "ani": 82.8626, "matched_fragments": 1621, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dengpaensis", "strain": "strain=XZHG99", "accession": "GCA_002946835.1", "taxid": 2049881, "species_taxid": 2049881, "relation_to_type": "type", "validated": true, "ani": 82.8515, "matched_fragments": 1482, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spectabilis", "strain": "strain=JCM 4308", "accession": "GCA_014649235.1", "taxid": 68270, "species_taxid": 68270, "relation_to_type": "type", "validated": true, "ani": 82.7681, "matched_fragments": 1615, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=DSM 46492", "accession": "GCA_001514135.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 82.7394, "matched_fragments": 1534, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces avermitilis", "strain": "strain=NBRC 14893", "accession": "GCA_005405965.1", "taxid": 33903, "species_taxid": 33903, "relation_to_type": "type", "validated": true, "ani": 82.7316, "matched_fragments": 1600, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces longispororuber", "strain": "strain=JCM 4784", "accession": "GCA_014656095.1", "taxid": 68230, "species_taxid": 68230, "relation_to_type": "type", "validated": true, "ani": 82.6501, "matched_fragments": 1558, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces davaonensis", "strain": "strain=JCM 4913", "accession": "GCA_000349325.1", "taxid": 348043, "species_taxid": 348043, "relation_to_type": "type", "validated": true, "ani": 82.6116, "matched_fragments": 1576, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 82.6108, "matched_fragments": 1655, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces recifensis", "strain": "strain=NRRL B-3811", "accession": "GCA_002154615.1", "taxid": 67355, "species_taxid": 67355, "relation_to_type": "type", "validated": true, "ani": 82.6068, "matched_fragments": 1042, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 82.481, "matched_fragments": 1518, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoluteus", "strain": "strain=JCM 4765", "accession": "GCA_004784465.1", "taxid": 29306, "species_taxid": 29306, "relation_to_type": "type", "validated": true, "ani": 82.4486, "matched_fragments": 1333, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces murinus", "strain": "strain=NRRL B-2286", "accession": "GCA_002154555.1", "taxid": 33900, "species_taxid": 33900, "relation_to_type": "type", "validated": true, "ani": 82.4408, "matched_fragments": 1191, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoluteus", "strain": "strain=JCM 4765", "accession": "GCA_014656035.1", "taxid": 29306, "species_taxid": 29306, "relation_to_type": "type", "validated": true, "ani": 82.3996, "matched_fragments": 1352, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoruber", "strain": "strain=NRRL B-1818", "accession": "GCA_001418585.1", "taxid": 1943, "species_taxid": 1943, "relation_to_type": "type", "validated": true, "ani": 82.3369, "matched_fragments": 1324, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseofuscus", "strain": "strain=DSM 40191", "accession": "GCA_014673495.1", "taxid": 146922, "species_taxid": 146922, "relation_to_type": "type", "validated": true, "ani": 82.3296, "matched_fragments": 1448, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoruber", "strain": "strain=DSM 40281", "accession": "GCA_001514205.1", "taxid": 1943, "species_taxid": 1943, "relation_to_type": "type", "validated": true, "ani": 82.2854, "matched_fragments": 1570, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 82.2782, "matched_fragments": 1563, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces malaysiense", "strain": "strain=MUSC 136", "accession": "GCA_000980885.2", "taxid": 1428626, "species_taxid": 1428626, "relation_to_type": "type", "validated": true, "ani": 82.2206, "matched_fragments": 1417, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseofuscus", "strain": "strain=NRRL B-5429", "accession": "GCA_000718315.1", "taxid": 146922, "species_taxid": 146922, "relation_to_type": "type", "validated": true, "ani": 82.1599, "matched_fragments": 1432, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces chilikensis", "strain": "strain=RC 1830", "accession": "GCA_001642695.2", "taxid": 1194079, "species_taxid": 1194079, "relation_to_type": "type", "validated": true, "ani": 81.644, "matched_fragments": 1195, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nitrosporeus", "strain": "strain=ATCC 12769", "accession": "GCA_008704555.1", "taxid": 28894, "species_taxid": 28894, "relation_to_type": "type", "validated": true, "ani": 81.3019, "matched_fragments": 1304, "total_fragments": 2783, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014621695.1", "gtdb_species": "s__Streptomyces sp014621695", "ani": 100.0, "matched_fragments": 2782, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003259365.1", "gtdb_species": "s__Streptomyces sp003259365", "ani": 86.0451, "matched_fragments": 1838, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000373565.1", "gtdb_species": "s__Streptomyces sp000373565", "ani": 86.0413, "matched_fragments": 1878, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017377775.1", "gtdb_species": "s__Streptomyces sp017377775", "ani": 86.0034, "matched_fragments": 1944, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004005495.1", "gtdb_species": "s__Streptomyces sp004005495", "ani": 84.5026, "matched_fragments": 1775, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002803065.1", "gtdb_species": "s__Streptomyces sp002803065", "ani": 84.3734, "matched_fragments": 1866, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001419745.1", "gtdb_species": "s__Streptomyces silaceus", "ani": 83.4333, "matched_fragments": 1496, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002300165.1", "gtdb_species": "s__Streptomyces sp002300165", "ani": 83.0295, "matched_fragments": 1577, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.35", "min_intra_species_ani": "96.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002813405.1", "gtdb_species": "s__Streptomyces sp002813405", "ani": 82.7678, "matched_fragments": 1574, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007827595.1", "gtdb_species": "s__Streptomyces sp007827595", "ani": 82.3547, "matched_fragments": 1602, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000720255.1", "gtdb_species": "s__Streptomyces griseus_I", "ani": 82.34, "matched_fragments": 1536, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000980885.2", "gtdb_species": "s__Streptomyces malaysiense", "ani": 82.2155, "matched_fragments": 1418, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000317595.1", "gtdb_species": "s__Streptomyces ipomoeae", "ani": 81.9809, "matched_fragments": 1406, "total_fragments": 2783, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.757, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 0.998, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "xanthii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }