{ "type": "genome", "identifier": "GCF_014623485.1", "organism": "Chryseobacterium manosquense", "title": "Chryseobacterium manosquense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IHU - Mediterranee Infection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014623485.1", "bioproject": "PRJNA224116", "biosample": "SAMN15543002", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2754694", "species_taxid": "2754694", "organism_name": "Chryseobacterium manosquense", "infraspecific_name": "strain=Marseille-Q2069", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/16", "asm_name": "ASM1462348v1", "asm_submitter": "IHU - Mediterranee Infection", "gbrs_paired_asm": "GCA_014623485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/623/485/GCF_014623485.1_ASM1462348v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2944264", "genome_size_ungapped": "2932092", "gc_percent": "37.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014623485.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2866", "protein_coding_gene_count": "2768", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-16", "dateModified": "2020-09-16", "datePublished": "2020-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium manosquense" ], "sample_taxid": [ "2754694" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France:Marseille" ], "sample_host_location_id": [], "data_size": "0.811 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2944164", "Number of Sequences": "1", "Longest Sequences (bp)": "2944164", "N50 (bp)": "2944164", "Gap Ratio (%)": "0.410032", "GCcontent (%)": "36.9", "Number of CDSs": "2744", "Average Protein Length": "313.5", "Coding Ratio (%)": "87.7", "Number of rRNAs": "12", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 80.0599, "matched_fragments": 420, 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"below_threshold" }, { "organism_name": "Kaistella carnis", "strain": "strain=G0081", "accession": "GCA_003860585.1", "taxid": 1241979, "species_taxid": 1241979, "relation_to_type": "type", "validated": true, "ani": 78.676, "matched_fragments": 316, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium koreense", "strain": "strain=CCUG 49689", "accession": "GCA_001045435.1", "taxid": 232216, "species_taxid": 232216, "relation_to_type": "type", "validated": true, "ani": 78.6488, "matched_fragments": 312, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella treverensis", "strain": "strain=DSM 22251", "accession": "GCA_900114045.1", "taxid": 631455, "species_taxid": 631455, "relation_to_type": "type", "validated": true, "ani": 78.5644, "matched_fragments": 282, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella jeonii", "strain": "strain=NCTC13459", "accession": "GCA_900638245.1", "taxid": 266749, "species_taxid": 266749, "relation_to_type": "type", "validated": true, "ani": 78.4766, "matched_fragments": 355, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella jeonii", "strain": "strain=DSM 17048", "accession": "GCA_000812865.1", "taxid": 266749, "species_taxid": 266749, "relation_to_type": "type", "validated": true, "ani": 78.3662, "matched_fragments": 351, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella gelatinilytica", "strain": "strain=G5-32", "accession": "GCA_015679325.1", "taxid": 2787636, "species_taxid": 2787636, "relation_to_type": "type", "validated": true, "ani": 78.2017, "matched_fragments": 349, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella solincola", "strain": "strain=DSM 22468", "accession": "GCA_000812875.1", "taxid": 510955, "species_taxid": 510955, "relation_to_type": "type", "validated": true, "ani": 78.1139, "matched_fragments": 274, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella palustris", "strain": "strain=DSM 21579", "accession": "GCA_000422265.1", "taxid": 493376, "species_taxid": 493376, "relation_to_type": "type", "validated": true, "ani": 78.0193, "matched_fragments": 242, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium piscium", "strain": "strain=CCUG 51923", "accession": "GCA_003385415.1", "taxid": 333702, "species_taxid": 333702, "relation_to_type": "type", "validated": true, "ani": 77.6351, "matched_fragments": 243, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium glaciei", "strain": "strain=IHBB 10212", "accession": "GCA_001648155.1", "taxid": 1685010, "species_taxid": 1685010, 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true, "ani": 77.4129, "matched_fragments": 156, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium caseinilyticum", "strain": "strain=GCR10", "accession": "GCA_014837145.1", "taxid": 2771428, "species_taxid": 2771428, "relation_to_type": "type", "validated": true, "ani": 77.2552, "matched_fragments": 197, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000735695.2", "gtdb_species": "s__Kaistella haifensis", "ani": 96.4072, "matched_fragments": 748, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Kaistella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.72", "min_intra_species_ani": "96.43", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", 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