{ "type": "genome", "identifier": "GCF_014635165.1", "organism": "Pseudoxanthomonas indica", "title": "Pseudoxanthomonas indica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014635165.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244851", "wgs_master": "BMCL00000000.1", "refseq_category": "na", "taxid": "428993", "species_taxid": "428993", "organism_name": "Pseudoxanthomonas indica", "infraspecific_name": "strain=CCM 7430", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1463516v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014635165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/635/165/GCF_014635165.1_ASM1463516v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3955994", "genome_size_ungapped": "3954935", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014635165.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "3655", "protein_coding_gene_count": "3557", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoxanthomonas indica" ], "sample_taxid": [ "428993" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.084 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3955994", "Number of Sequences": "14", "Longest Sequences (bp)": "1502103", "N50 (bp)": "1338676", "Gap Ratio (%)": "0.026770", "GCcontent (%)": "65.4", "Number of CDSs": "3616", "Average Protein Length": "331.9", "Coding Ratio (%)": "91.0", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoxanthomonas indica", "strain": "strain=CCM 7430", "accession": "GCA_014635165.1", "taxid": 428993, "species_taxid": 428993, 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82.2311, "matched_fragments": 762, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas mexicana", "strain": "strain=DSM 17121", "accession": "GCA_010093385.1", "taxid": 128785, "species_taxid": 128785, "relation_to_type": "type", "validated": true, "ani": 82.1472, "matched_fragments": 733, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas japonensis", "strain": "strain=DSM 17109", "accession": "GCA_010093445.1", "taxid": 69284, "species_taxid": 69284, "relation_to_type": "type", "validated": true, "ani": 82.1252, "matched_fragments": 775, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas wuyuanensis", "strain": "strain=CGMCC 1.10978", "accession": "GCA_900215535.1", "taxid": 1073196, "species_taxid": 1073196, "relation_to_type": "type", "validated": true, "ani": 82.0665, "matched_fragments": 792, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 81.0767, "matched_fragments": 662, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas indica", "strain": "strain=PPL560", "accession": "GCA_022669045.1", "taxid": 2912242, "species_taxid": 2912242, "relation_to_type": "type", "validated": true, "ani": 81.0762, "matched_fragments": 693, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas dokdonensis", "strain": "strain=DSM 21858", "accession": "GCA_001431405.1", "taxid": 344882, "species_taxid": 344882, "relation_to_type": "type", "validated": true, "ani": 81.0375, "matched_fragments": 706, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas winnipegensis", "strain": "strain=NML 130738", "accession": "GCA_004283755.1", "taxid": 2480810, "species_taxid": 2480810, "relation_to_type": "type", "validated": true, "ani": 81.0185, "matched_fragments": 649, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 80.9951, "matched_fragments": 578, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas sacchari", "strain": "strain=CFBP4641", "accession": "GCA_002940085.1", "taxid": 56458, "species_taxid": 56458, "relation_to_type": "suspected-type", "validated": true, "ani": 80.965, "matched_fragments": 695, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas bentonitica", "strain": "strain=DSM 103927", "accession": "GCA_013185915.1", "taxid": 1450134, "species_taxid": 1450134, "relation_to_type": "type", "validated": true, "ani": 80.8618, "matched_fragments": 626, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas composti", "strain": "strain=GSS15", "accession": "GCA_004122095.1", "taxid": 2137479, "species_taxid": 2137479, "relation_to_type": "type", "validated": true, "ani": 80.7093, "matched_fragments": 659, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 80.6575, "matched_fragments": 557, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 80.1906, "matched_fragments": 583, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 80.1881, "matched_fragments": 601, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas cucumeris", "strain": "strain=CGMCC 1.10821", "accession": "GCA_007830035.1", "taxid": 985012, "species_taxid": 985012, "relation_to_type": "type", "validated": true, "ani": 80.1516, "matched_fragments": 583, "total_fragments": 1313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas arsenica", "strain": "strain=26-35", 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