{ "type": "genome", "identifier": "GCF_014635245.1", "organism": "Agaricicola taiwanensis", "title": "Agaricicola taiwanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014635245.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244855", "wgs_master": "BMCP00000000.1", "refseq_category": "reference genome", "taxid": "591372", "species_taxid": "591372", "organism_name": "Agaricicola taiwanensis", "infraspecific_name": "strain=CCM 7684", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1463524v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014635245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/635/245/GCF_014635245.1_ASM1463524v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3760381", "genome_size_ungapped": "3760381", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014635245.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "3636", "protein_coding_gene_count": "3566", "non_coding_gene_count": "52", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Agaricicola taiwanensis" ], "sample_taxid": [ "591372" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.049 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3760381", "Number of Sequences": "17", "Longest Sequences (bp)": "1527800", "N50 (bp)": "1248194", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.0", "Number of CDSs": "3612", "Average Protein Length": "316.9", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Agaricicola taiwanensis", "strain": "strain=CCM 7684", "accession": "GCA_014635245.1", "taxid": 591372, "species_taxid": 591372, 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"Blastochloris viridis", "strain": "strain=ATCC 19567", "accession": "GCA_001402875.1", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 77.2148, "matched_fragments": 183, "total_fragments": 1245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azorhizobium doebereinerae", "strain": "strain=UFLA1-100", "accession": "GCA_000473085.1", "taxid": 281091, "species_taxid": 281091, "relation_to_type": "type", "validated": true, "ani": 77.1989, "matched_fragments": 244, "total_fragments": 1245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia granuli", "strain": "strain=Ko04", "accession": "GCA_000380505.1", "taxid": 363259, "species_taxid": 363259, "relation_to_type": "type", "validated": true, "ani": 77.148, "matched_fragments": 201, "total_fragments": 1245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthonobacter albigriseus", "strain": "strain=KCTC 42450", "accession": "GCA_013839445.1", "taxid": 1683161, "species_taxid": 1683161, "relation_to_type": "type", "validated": true, "ani": 77.1365, "matched_fragments": 193, "total_fragments": 1245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas faecalis", "strain": "strain=JCM 11668", "accession": "GCA_003217325.1", "taxid": 99655, "species_taxid": 99655, "relation_to_type": "type", "validated": true, "ani": 77.1334, "matched_fragments": 172, "total_fragments": 1245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 77.0874, "matched_fragments": 212, "total_fragments": 1245, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, 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