{
    "type": "genome",
    "identifier": "GCF_014635265.1",
    "organism": "Paenalcaligenes hominis",
    "title": "Paenalcaligenes hominis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014635265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00244856",
        "wgs_master": "BMCQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "643674",
        "species_taxid": "643674",
        "organism_name": "Paenalcaligenes hominis",
        "infraspecific_name": "strain=CCM 7698",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/11",
        "asm_name": "ASM1463526v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014635265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/635/265/GCF_014635265.1_ASM1463526v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2731429",
        "genome_size_ungapped": "2731429",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "22",
        "contig_count": "22",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014635265.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "2632",
        "protein_coding_gene_count": "2548",
        "non_coding_gene_count": "49",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-11",
    "dateModified": "2020-09-11",
    "datePublished": "2020-09-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenalcaligenes hominis"
        ],
        "sample_taxid": [
            "643674"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.782 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2731429",
        "Number of Sequences": "22",
        "Longest Sequences (bp)": "656249",
        "N50 (bp)": "377049",
        "Gap Ratio (%)": "0.000110",
        "GCcontent (%)": "48.3",
        "Number of CDSs": "2554",
        "Average Protein Length": "326.3",
        "Coding Ratio (%)": "91.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Paenalcaligenes hominis",
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                "species_taxid": 643674,
                "relation_to_type": "type",
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                "total_fragments": 900,
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            },
            {
                "organism_name": "Paenalcaligenes hominis",
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                "species_taxid": 643674,
                "relation_to_type": "type",
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                "ani": 99.9978,
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                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenalcaligenes niemegkensis",
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                "accession": "GCA_022230885.1",
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                "validated": true,
                "ani": 77.2608,
                "matched_fragments": 85,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes ammonioxydans",
                "strain": "strain=HO-1",
                "accession": "GCA_019343455.1",
                "taxid": 2582914,
                "species_taxid": 2582914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1776,
                "matched_fragments": 50,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes pakistanensis",
                "strain": "strain=KCTC 42083",
                "accession": "GCA_014652815.1",
                "taxid": 1482717,
                "species_taxid": 1482717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6831,
                "matched_fragments": 60,
                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes faecalis subsp. faecalis",
                "strain": "strain=NBRC 13111",
                "accession": "GCA_000739855.1",
                "taxid": 32001,
                "species_taxid": 511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3901,
                "matched_fragments": 64,
                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011927625.1",
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                "matched_fragments": 899,
                "total_fragments": 900,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.31",
                "min_intra_species_ani": "96.62",
                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_012839585.1",
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                "matched_fragments": 224,
                "total_fragments": 900,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012518715.1",
                "gtdb_species": "s__Paenalcaligenes sp012518715",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_004791645.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_011290505.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_019120675.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_013416485.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas_A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "sporulation": null,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Paenalcaligenes",
        "hominis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}