{ "tc_result": [ { "organism_name": "Rhodococcus trifolii", "strain": "strain=CCM 7905", "accession": "GCA_014635345.1", "taxid": 908250, "species_taxid": 908250, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1755, "total_fragments": 1755, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodococcus corynebacterioides", "strain": "strain=NBRC 14404", "accession": "GCA_001894765.1", "taxid": 53972, "species_taxid": 53972, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5284, "matched_fragments": 608, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus kroppenstedtii", "strain": "strain=DSM 44908", "accession": "GCA_900111805.1", "taxid": 293050, "species_taxid": 293050, "relation_to_type": "type", "validated": true, "ani": 79.5176, "matched_fragments": 604, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=LMG 3623", "accession": "GCA_000761055.1", "taxid": 1828, "species_taxid": 1828, "relation_to_type": "type", "validated": true, "ani": 78.8545, "matched_fragments": 584, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=C 7", "accession": "GCA_000473915.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 78.5087, "matched_fragments": 456, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=NBRC 101255", "accession": "GCA_001552575.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 78.4304, "matched_fragments": 459, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=DSM 20307", "accession": "GCA_002094305.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 78.4218, "matched_fragments": 458, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=NCTC1621", "accession": "GCA_900455845.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 78.4101, "matched_fragments": 462, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus opacus", "strain": "strain=ATCC 51881", "accession": "GCA_012396235.1", "taxid": 37919, "species_taxid": 37919, "relation_to_type": "type", "validated": true, "ani": 78.1588, "matched_fragments": 572, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus opacus", "strain": "strain=DSM 43205", "accession": "GCA_001646735.1", "taxid": 37919, "species_taxid": 37919, "relation_to_type": "type", "validated": true, "ani": 78.1572, "matched_fragments": 555, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus aetherivorans", "strain": "strain=DSM 44752", "accession": "GCA_011058165.1", "taxid": 191292, "species_taxid": 191292, "relation_to_type": "type", "validated": true, "ani": 78.1166, "matched_fragments": 484, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus aetherivorans", "strain": "strain=JCM 14343", "accession": "GCA_009176285.1", "taxid": 191292, "species_taxid": 191292, "relation_to_type": "type", "validated": true, "ani": 78.0502, "matched_fragments": 491, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia shimofusensis", "strain": "strain=NBRC 100134", "accession": "GCA_001613125.1", "taxid": 228596, "species_taxid": 228596, "relation_to_type": "type", "validated": true, "ani": 77.5958, "matched_fragments": 396, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asiatica", "strain": "strain=NBRC 100129", "accession": "GCA_000308415.1", "taxid": 209252, "species_taxid": 209252, "relation_to_type": "type", "validated": true, "ani": 77.5247, "matched_fragments": 370, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia arizonensis", "strain": "strain=W9405", "accession": "GCA_001310275.1", "taxid": 1141647, "species_taxid": 1141647, "relation_to_type": "type", "validated": true, "ani": 77.3235, "matched_fragments": 356, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia beijingensis", "strain": "strain=NBRC 16342", "accession": "GCA_001612785.1", "taxid": 95162, "species_taxid": 95162, "relation_to_type": "type", "validated": true, "ani": 77.2998, "matched_fragments": 411, "total_fragments": 1755, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014635345.1", "gtdb_species": "s__Rhodococcus_C trifolii", "ani": 100.0, "matched_fragments": 1755, "total_fragments": 1755, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000686025.1", "gtdb_species": "s__Rhodococcus_C sp000686025", "ani": 79.7211, "matched_fragments": 733, "total_fragments": 1755, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.13", "min_intra_species_ani": "95.65", 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