{
    "type": "genome",
    "identifier": "GCF_014635525.1",
    "organism": "Mucilaginibacter phyllosphaerae",
    "title": "Mucilaginibacter phyllosphaerae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014635525.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00244866",
        "wgs_master": "BMCZ00000000.1",
        "refseq_category": "na",
        "taxid": "1812349",
        "species_taxid": "1812349",
        "organism_name": "Mucilaginibacter phyllosphaerae",
        "infraspecific_name": "strain=CCM 8625",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1463552v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014635525.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/635/525/GCF_014635525.1_ASM1463552v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4420556",
        "genome_size_ungapped": "4420556",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "25",
        "contig_count": "25",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014635525.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "3941",
        "protein_coding_gene_count": "3883",
        "non_coding_gene_count": "47",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mucilaginibacter phyllosphaerae"
        ],
        "sample_taxid": [
            "1812349"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.244 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4420556",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "863221",
        "N50 (bp)": "645621",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.7",
        "Number of CDSs": "3839",
        "Average Protein Length": "340.8",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "4",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Mucilaginibacter phyllosphaerae",
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                "accession": "GCA_014635525.1",
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                "species_taxid": 1812349,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1462,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mucilaginibacter phyllosphaerae",
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                "accession": "GCA_004378255.1",
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                "species_taxid": 1812349,
                "relation_to_type": "type",
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                "ani": 99.9999,
                "matched_fragments": 1460,
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                "status": "conclusive"
            },
            {
                "organism_name": "Mucilaginibacter phyllosphaerae",
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                "accession": "GCA_014196695.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mucilaginibacter terrigena",
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                "accession": "GCA_004168255.1",
                "taxid": 2492395,
                "species_taxid": 2492395,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 822,
                "total_fragments": 1462,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucilaginibacter glaciei",
                "strain": "strain=ZB1P21",
                "accession": "GCA_014773245.1",
                "taxid": 2772109,
                "species_taxid": 2772109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7859,
                "matched_fragments": 678,
                "total_fragments": 1462,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucilaginibacter pankratovii",
                "strain": "strain=ZT4R22",
                "accession": "GCA_014773265.1",
                "taxid": 2772110,
                "species_taxid": 2772110,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3276,
                "matched_fragments": 668,
                "total_fragments": 1462,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucilaginibacter gilvus",
                "strain": "strain=F01003",
                "accession": "GCA_004054195.1",
                "taxid": 2305909,
                "species_taxid": 2305909,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0199,
                "matched_fragments": 625,
                "total_fragments": 1462,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucilaginibacter conchicola",
                "strain": "strain=MYSH2",
                "accession": "GCA_003432115.1",
                "taxid": 2303333,
                "species_taxid": 2303333,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9986,
                "matched_fragments": 611,
                "total_fragments": 1462,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucilaginibacter psychrotolerans",
                "strain": "strain=NH7-4",
                "accession": "GCA_004519315.1",
                "taxid": 1524096,
                "species_taxid": 1524096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5629,
                "matched_fragments": 528,
                "total_fragments": 1462,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucilaginibacter pallidiroseus",
                "strain": "strain=dk17",
                "accession": "GCA_007846085.1",
                "taxid": 2599295,
                "species_taxid": 2599295,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5098,
                "matched_fragments": 481,
                "total_fragments": 1462,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_004378255.1",
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                "ani": 99.9999,
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                "total_fragments": 1462,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003635105.1",
                "gtdb_species": "s__Mucilaginibacter sp003635105",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001636615.1",
                "gtdb_species": "s__Mucilaginibacter sp001636615",
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                "matched_fragments": 850,
                "total_fragments": 1462,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004168255.1",
                "gtdb_species": "s__Mucilaginibacter terrigena",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
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                "accession": "GCF_014773275.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
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            {
                "accession": "GCF_010093045.1",
                "gtdb_species": "s__Mucilaginibacter sp010093045",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_005938025.2",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004519315.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.382,
        "cell_length": 0.217,
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        "growth_tmp": 25.111,
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        "rRNA16S_genes": 2.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.269,
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        "aerobic_respiration": 0.73,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Mucilaginibacter",
        "phyllosphaerae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}