{ "tc_result": [ { "organism_name": "Oxalicibacterium faecigallinarum", "strain": "strain=CCM 2767", "accession": "GCA_014635705.1", "taxid": 573741, "species_taxid": 573741, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1102, "total_fragments": 1104, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Oxalicibacterium flavum", "strain": "strain=CCM 7086", "accession": "GCA_014635065.1", "taxid": 179467, "species_taxid": 179467, "relation_to_type": "type", "validated": true, "ani": 80.3875, "matched_fragments": 569, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium solurbis", "strain": "strain=CCM 7664", "accession": "GCA_014635845.1", "taxid": 69280, "species_taxid": 69280, "relation_to_type": "type", "validated": true, "ani": 79.2395, "matched_fragments": 430, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herminiimonas fonticola", "strain": "strain=DSM 18555", "accession": "GCA_004361795.1", "taxid": 303380, "species_taxid": 303380, "relation_to_type": "type", "validated": true, "ani": 78.931, "matched_fragments": 394, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herminiimonas fonticola", "strain": "strain=S-94", "accession": "GCA_003293745.1", "taxid": 303380, "species_taxid": 303380, "relation_to_type": "type", "validated": true, "ani": 78.8782, "matched_fragments": 401, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herminiimonas arsenitoxidans", "strain": "strain=AS8", "accession": "GCA_900130075.1", "taxid": 1809410, "species_taxid": 1809410, "relation_to_type": "type", "validated": true, "ani": 78.8115, "matched_fragments": 398, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum rhizosphaerae", "strain": "strain=UMS-37", "accession": "GCA_001189965.1", "taxid": 346179, "species_taxid": 346179, "relation_to_type": "type", "validated": true, "ani": 78.3378, "matched_fragments": 257, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum hiltneri", "strain": "strain=N3", "accession": "GCA_001267925.1", "taxid": 341045, "species_taxid": 341045, "relation_to_type": "type", "validated": true, "ani": 78.1905, "matched_fragments": 260, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum lusitanum", "strain": "strain=P6-12", "accession": "GCA_000256565.1", "taxid": 213312, "species_taxid": 213312, "relation_to_type": "type", "validated": true, "ani": 78.0486, "matched_fragments": 232, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas fungivorans", "strain": "strain=Ter6", "accession": "GCA_001584145.1", "taxid": 158899, "species_taxid": 158899, "relation_to_type": "type", "validated": true, "ani": 78.0454, "matched_fragments": 235, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum cavernae", "strain": "strain=K2R10-39", "accession": "GCA_003590875.1", "taxid": 2320862, "species_taxid": 2320862, "relation_to_type": "type", "validated": true, "ani": 78.0294, "matched_fragments": 251, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas arenae", "strain": "strain=Ter10", "accession": "GCA_001584165.1", "taxid": 279058, "species_taxid": 279058, "relation_to_type": "type", "validated": true, "ani": 78.0226, "matched_fragments": 220, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas humicola", "strain": "strain=RLT1W51", "accession": "GCA_018304945.1", "taxid": 2825886, "species_taxid": 2825886, "relation_to_type": "type", "validated": true, "ani": 77.9959, "matched_fragments": 235, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum autotrophicum", "strain": "strain=IAM 14942", "accession": "GCA_001189915.1", "taxid": 180195, "species_taxid": 180195, "relation_to_type": "type", "validated": true, "ani": 77.9598, "matched_fragments": 266, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas silvisoli", "strain": "strain=RXD178", "accession": "GCA_018305005.1", "taxid": 2825884, "species_taxid": 2825884, "relation_to_type": "type", "validated": true, "ani": 77.8676, "matched_fragments": 234, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum saxi", "strain": "strain=K1R23-30", "accession": "GCA_003591035.1", "taxid": 2320863, "species_taxid": 2320863, "relation_to_type": "type", "validated": true, "ani": 77.8468, "matched_fragments": 254, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas pratensis", "strain": "strain=Ter91", "accession": "GCA_001584185.1", "taxid": 279113, "species_taxid": 279113, "relation_to_type": "type", "validated": true, "ani": 77.813, "matched_fragments": 253, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum malthae", "strain": "strain=CC-AFH3", "accession": "GCA_015352985.1", "taxid": 1260987, "species_taxid": 1260987, "relation_to_type": "type", "validated": true, "ani": 77.4972, "matched_fragments": 246, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella aceris", "strain": "strain=SAP-35", "accession": "GCA_011090165.1", "taxid": 2703883, "species_taxid": 2703883, "relation_to_type": "type", "validated": true, "ani": 77.4633, "matched_fragments": 208, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", "validated": true, "ani": 77.4126, "matched_fragments": 193, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glaciimonas soli", "strain": "strain=GS1", "accession": "GCA_009497155.1", "taxid": 2590999, "species_taxid": 2590999, "relation_to_type": "type", "validated": true, "ani": 77.1399, "matched_fragments": 94, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014635705.1", "gtdb_species": "s__Oxalicibacterium faecigallinarum", "ani": 100.0, "matched_fragments": 1102, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Oxalicibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014635065.1", "gtdb_species": "s__Oxalicibacterium flavum", "ani": 80.3978, "matched_fragments": 568, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Oxalicibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014635845.1", "gtdb_species": "s__Oxalicibacterium solurbis", "ani": 79.2395, "matched_fragments": 430, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Oxalicibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000026125.1", "gtdb_species": "s__Herminiimonas arsenicoxydans", "ani": 79.0321, "matched_fragments": 427, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herminiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000013625.1", "gtdb_species": "s__Herminiimonas sp000013625", "ani": 78.8956, "matched_fragments": 401, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herminiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003293745.1", "gtdb_species": "s__Herminiimonas fonticola", "ani": 78.8782, "matched_fragments": 401, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herminiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015645465.1", "gtdb_species": "s__Herminiimonas contaminans", "ani": 78.8661, "matched_fragments": 398, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herminiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.73", "min_intra_species_ani": "97.73", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003852535.1", "gtdb_species": "s__Herminiimonas sp003852535", "ani": 78.8468, "matched_fragments": 426, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herminiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001464355.1", "gtdb_species": "s__Herminiimonas sp001464355", "ani": 78.594, "matched_fragments": 397, "total_fragments": 1104, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001267925.1", "gtdb_species": "s__Herbaspirillum hiltneri", "ani": 78.2633, "matched_fragments": 261, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000256565.1", "gtdb_species": "s__Herbaspirillum lusitanum", "ani": 78.0641, "matched_fragments": 231, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Herbaspirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018305005.1", "gtdb_species": "s__Collimonas sp018305005", "ani": 77.8827, "matched_fragments": 233, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Collimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007874125.1", "gtdb_species": "s__Noviherbaspirillum sp007874125", "ani": 77.8422, "matched_fragments": 246, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Noviherbaspirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001584185.1", "gtdb_species": "s__Collimonas pratensis", "ani": 77.7531, "matched_fragments": 253, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Collimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002564105.1", "gtdb_species": "s__Collimonas sp002564105", "ani": 77.673, "matched_fragments": 239, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Collimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015352985.1", "gtdb_species": "s__Noviherbaspirillum malthae", "ani": 77.4972, "matched_fragments": 246, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Noviherbaspirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009497155.1", "gtdb_species": "s__Glaciimonas soli", "ani": 77.1399, "matched_fragments": 94, "total_fragments": 1104, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Glaciimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }