{
    "type": "genome",
    "identifier": "GCF_014636045.1",
    "organism": "Sphingobium fuliginis",
    "title": "Sphingobium fuliginis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014636045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00244889",
        "wgs_master": "BMDU00000000.1",
        "refseq_category": "na",
        "taxid": "336203",
        "species_taxid": "336203",
        "organism_name": "Sphingobium fuliginis",
        "infraspecific_name": "strain=CCM 7327",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1463604v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014636045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/636/045/GCF_014636045.1_ASM1463604v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4591999",
        "genome_size_ungapped": "4591874",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014636045.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4348",
        "protein_coding_gene_count": "4253",
        "non_coding_gene_count": "56",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobium fuliginis"
        ],
        "sample_taxid": [
            "336203"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.262 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4591999",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "980408",
        "N50 (bp)": "445936",
        "Gap Ratio (%)": "0.002940",
        "GCcontent (%)": "64.9",
        "Number of CDSs": "4282",
        "Average Protein Length": "322.5",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sphingobium fuliginis",
                "strain": "strain=CCM 7327",
                "accession": "GCA_014636045.1",
                "taxid": 336203,
                "species_taxid": 336203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1517,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingobium fuliginis",
                "strain": "strain=DSM 18781",
                "accession": "GCA_004152845.1",
                "taxid": 336203,
                "species_taxid": 336203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9993,
                "matched_fragments": 1520,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingobium indicum",
                "strain": "strain=B90A",
                "accession": "GCA_000264945.2",
                "taxid": 332055,
                "species_taxid": 332055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.6272,
                "matched_fragments": 952,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium chlorophenolicum",
                "strain": "strain=NBRC 16172",
                "accession": "GCA_001598515.1",
                "taxid": 46429,
                "species_taxid": 46429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2535,
                "matched_fragments": 867,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium chlorophenolicum",
                "strain": "strain=NBRC 16172",
                "accession": "GCA_000722875.1",
                "taxid": 46429,
                "species_taxid": 46429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0577,
                "matched_fragments": 948,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium chungbukense",
                "strain": "strain=DJ77",
                "accession": "GCA_001005725.1",
                "taxid": 56193,
                "species_taxid": 56193,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1379,
                "matched_fragments": 1020,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium estronivorans",
                "strain": "strain=AXB",
                "accession": "GCA_008692605.1",
                "taxid": 1577690,
                "species_taxid": 1577690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4443,
                "matched_fragments": 822,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium quisquiliarum",
                "strain": "strain=P25",
                "accession": "GCA_000445065.1",
                "taxid": 538379,
                "species_taxid": 538379,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7662,
                "matched_fragments": 739,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas changnyeongensis",
                "strain": "strain=C33",
                "accession": "GCA_009913435.1",
                "taxid": 2698679,
                "species_taxid": 2698679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3282,
                "matched_fragments": 377,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas aracearum",
                "strain": "strain=WZY 27",
                "accession": "GCA_003345355.1",
                "taxid": 2283317,
                "species_taxid": 2283317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2543,
                "matched_fragments": 383,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizorhabdus phycosphaerae",
                "strain": "strain=MK52",
                "accession": "GCA_011044255.1",
                "taxid": 2711156,
                "species_taxid": 2711156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1508,
                "matched_fragments": 353,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas cavernae",
                "strain": "strain=K2R01-6",
                "accession": "GCA_003590775.1",
                "taxid": 2320861,
                "species_taxid": 2320861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1333,
                "matched_fragments": 373,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas profundi",
                "strain": "strain=LMO-1",
                "accession": "GCA_009739515.1",
                "taxid": 2681549,
                "species_taxid": 2681549,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8042,
                "matched_fragments": 441,
                "total_fragments": 1520,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004152845.1",
                "gtdb_species": "s__Sphingobium fuliginis",
                "ani": 99.9993,
                "matched_fragments": 1520,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000264945.2",
                "gtdb_species": "s__Sphingobium indicum",
                "ani": 91.5776,
                "matched_fragments": 955,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.64",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_013375535.1",
                "gtdb_species": "s__Sphingobium sp013375535",
                "ani": 89.1987,
                "matched_fragments": 999,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004361945.1",
                "gtdb_species": "s__Sphingobium barthaii_A",
                "ani": 88.5325,
                "matched_fragments": 1023,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000722875.1",
                "gtdb_species": "s__Sphingobium chlorophenolicum",
                "ani": 88.0531,
                "matched_fragments": 949,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "95.89",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001005725.1",
                "gtdb_species": "s__Sphingobium chungbukense",
                "ani": 87.1028,
                "matched_fragments": 1023,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.77",
                "min_intra_species_ani": "97.77",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008692605.1",
                "gtdb_species": "s__Sphingobium estronivorans",
                "ani": 86.4499,
                "matched_fragments": 822,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013375555.1",
                "gtdb_species": "s__Sphingobium sp013375555",
                "ani": 86.2234,
                "matched_fragments": 867,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014873695.1",
                "gtdb_species": "s__Sphingobium sp014873695",
                "ani": 85.5588,
                "matched_fragments": 951,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000412635.1",
                "gtdb_species": "s__Sphingobium bisphenolivorans",
                "ani": 83.92,
                "matched_fragments": 812,
                "total_fragments": 1520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.278,
        "cell_length": 0.094,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 28.868,
        "optimum_ph": 7.125,
        "genome_size": 5565812.0,
        "gc_content": 64.099,
        "coding_genes": 4211.023,
        "rRNA16S_genes": 2.333,
        "tRNA_genes": 53.785,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.347,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sphingobium",
        "fuliginis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}