{ "type": "genome", "identifier": "GCF_014636275.1", "organism": "Cellulomonas carbonis", "title": "Cellulomonas carbonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014636275.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244911", "wgs_master": "BMEB00000000.1", "refseq_category": "reference genome", "taxid": "1386092", "species_taxid": "1386092", "organism_name": "Cellulomonas carbonis", "infraspecific_name": "strain=CGMCC 1.10786", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1463627v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014636275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/636/275/GCF_014636275.1_ASM1463627v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3904075", "genome_size_ungapped": "3903948", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014636275.1-RS_2024_08_03", "annotation_date": "2024-08-03", "total_gene_count": "3560", "protein_coding_gene_count": "3469", "non_coding_gene_count": "51", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas carbonis" ], "sample_taxid": [ "1386092" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.011 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3904075", "Number of Sequences": "73", "Longest Sequences (bp)": "1161159", "N50 (bp)": "1030334", "Gap Ratio (%)": "0.003253", "GCcontent (%)": "74.2", "Number of CDSs": "3494", "Average Protein Length": "337.0", "Coding Ratio (%)": "90.5", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas carbonis", "strain": "strain=CGMCC 1.10786", "accession": "GCA_014636275.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1280, "total_fragments": 1282, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=T26", "accession": "GCA_000767175.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 99.8547, "matched_fragments": 1133, "total_fragments": 1282, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 81.7294, "matched_fragments": 797, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 81.1452, "matched_fragments": 721, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 80.1005, "matched_fragments": 599, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas massiliensis", "strain": "strain=JC225", "accession": "GCA_000312005.1", "taxid": 1465811, "species_taxid": 1465811, "relation_to_type": "type", "validated": true, "ani": 79.5205, "matched_fragments": 612, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gilvus", "strain": "strain=ATCC 13127", "accession": "GCA_000218545.1", "taxid": 11, "species_taxid": 11, "relation_to_type": "type", "validated": true, "ani": 79.5135, "matched_fragments": 583, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gelida", "strain": "strain=JCM 1490", "accession": "GCA_014647015.1", "taxid": 1712, "species_taxid": 1712, "relation_to_type": "type", "validated": true, "ani": 79.5033, "matched_fragments": 600, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3757, "matched_fragments": 621, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 79.349, "matched_fragments": 634, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.257, "matched_fragments": 645, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 79.2455, "matched_fragments": 586, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 79.1167, "matched_fragments": 606, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 79.0353, "matched_fragments": 646, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas xylanilytica", "strain": "strain=NBRC 101102", "accession": "GCA_007989805.1", "taxid": 233583, "species_taxid": 233583, "relation_to_type": "type", "validated": true, "ani": 78.9137, "matched_fragments": 599, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter inulinus", "strain": "strain=DSM 100099", "accession": "GCA_013415325.1", "taxid": 60922, "species_taxid": 60922, "relation_to_type": "type", "validated": true, "ani": 78.7389, "matched_fragments": 483, "total_fragments": 1282, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014636275.1", "gtdb_species": "s__Actinotalea carbonis", "ani": 100.0, "matched_fragments": 1280, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000603945.1", "gtdb_species": "s__Actinotalea ferrariae", "ani": 81.9421, "matched_fragments": 655, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016464425.1", "gtdb_species": "s__Actinotalea solisilvae", "ani": 81.6933, "matched_fragments": 803, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014360395.1", "gtdb_species": "s__Actinotalea sp014360395", "ani": 81.6718, "matched_fragments": 492, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009996735.1", "gtdb_species": "s__Actinotalea sp009996735", "ani": 81.3481, "matched_fragments": 730, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008364845.1", "gtdb_species": "s__Actinotalea sp008364845", "ani": 81.103, "matched_fragments": 725, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014042015.1", "gtdb_species": "s__Actinotalea sp014042015", "ani": 80.9678, "matched_fragments": 679, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.62", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000767215.1", "gtdb_species": "s__Actinotalea fermentans", "ani": 80.3597, "matched_fragments": 498, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Actinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000218545.1", "gtdb_species": "s__Cellulomonas gilvus", "ani": 79.4677, "matched_fragments": 588, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014763765.1", "gtdb_species": "s__Cellulomonas sp014763765", "ani": 79.2587, "matched_fragments": 563, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013409305.1", "gtdb_species": "s__Cellulomonas soli", "ani": 79.2424, "matched_fragments": 586, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016862675.1", "gtdb_species": "s__Cellulomonas chitinilytica", "ani": 79.1999, "matched_fragments": 674, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018388465.1", "gtdb_species": "s__Cellulomonas sp018388465", "ani": 79.1157, "matched_fragments": 549, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "99.29", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013415325.1", "gtdb_species": "s__Sanguibacter inulinus", "ani": 78.7421, "matched_fragments": 481, "total_fragments": 1282, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sanguibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.019, "cell_length": 0.334, "doubling_h": null, "growth_tmp": 29.739, "optimum_tmp": 28.666, "optimum_ph": 7.856, "genome_size": 2808659.677, "gc_content": 73.924, "coding_genes": 3692.833, "rRNA16S_genes": 2.0, "tRNA_genes": 45.0, "gram_stain": 0.944, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.25, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.75, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.846, "coccus_cell_shape": 0.076, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.076, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cellulomonas", "carbonis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }