{ "type": "genome", "identifier": "GCF_014636315.1", "organism": "Undibacterium terreum", "title": "Undibacterium terreum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014636315.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244915", "wgs_master": "BMED00000000.1", "refseq_category": "reference genome", "taxid": "1224302", "species_taxid": "1224302", "organism_name": "Undibacterium terreum", "infraspecific_name": "strain=CGMCC 1.10998", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1463631v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014636315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/636/315/GCF_014636315.1_ASM1463631v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6368998", "genome_size_ungapped": "6368998", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014636315.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "5763", "protein_coding_gene_count": "5683", "non_coding_gene_count": "57", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Undibacterium terreum" ], "sample_taxid": [ "1224302" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6368998", "Number of Sequences": "16", "Longest Sequences (bp)": "1929716", "N50 (bp)": "1272923", "Gap Ratio (%)": "0.000047", "GCcontent (%)": "54.8", "Number of CDSs": "5704", "Average Protein Length": "318.1", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Undibacterium terreum", "strain": "strain=CGMCC 1.10998", "accession": "GCA_014636315.1", "taxid": 1224302, "species_taxid": 1224302, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2116, "total_fragments": 2117, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Undibacterium pigrum", "strain": "strain=DSM 19792", "accession": "GCA_003201815.1", "taxid": 401470, "species_taxid": 401470, "relation_to_type": "type", "validated": true, "ani": 78.37, "matched_fragments": 433, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium jejuense", "strain": "strain=KACC 12607", "accession": "GCA_014284255.1", "taxid": 1344949, "species_taxid": 1344949, "relation_to_type": "type", "validated": true, "ani": 78.3491, "matched_fragments": 188, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium hunanense", "strain": "strain=CY18W", "accession": "GCA_014284335.1", "taxid": 2762292, "species_taxid": 2762292, "relation_to_type": "type", "validated": true, "ani": 78.3201, "matched_fragments": 513, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium umbellatum", "strain": "strain=NL8W", "accession": "GCA_014284125.1", "taxid": 2762300, "species_taxid": 2762300, "relation_to_type": "type", "validated": true, "ani": 78.2586, "matched_fragments": 421, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas humicola", "strain": "strain=RLT1W51", "accession": "GCA_018304945.1", "taxid": 2825886, "species_taxid": 2825886, "relation_to_type": "type", "validated": true, "ani": 78.107, "matched_fragments": 401, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum rhizosphaerae", "strain": "strain=UMS-37", "accession": "GCA_001189965.1", "taxid": 346179, "species_taxid": 346179, "relation_to_type": "type", "validated": true, "ani": 78.0571, "matched_fragments": 363, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas fungivorans", "strain": "strain=Ter6", "accession": "GCA_001584145.1", "taxid": 158899, "species_taxid": 158899, "relation_to_type": "type", "validated": true, "ani": 77.924, "matched_fragments": 403, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas antrihumi", "strain": "strain=DSM 104040", "accession": "GCA_018304965.1", "taxid": 1940615, "species_taxid": 1940615, "relation_to_type": "type", "validated": true, "ani": 77.9178, "matched_fragments": 328, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas pratensis", "strain": "strain=Ter91", "accession": "GCA_001584185.1", "taxid": 279113, "species_taxid": 279113, "relation_to_type": "type", "validated": true, "ani": 77.9139, "matched_fragments": 403, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Undibacterium rivi", "strain": "strain=FT147W", "accession": "GCA_018139565.1", "taxid": 2828729, "species_taxid": 2828729, "relation_to_type": "type", "validated": true, "ani": 77.872, "matched_fragments": 294, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum seropedicae", "strain": "strain=Z67", "accession": "GCA_013180375.1", "taxid": 964, "species_taxid": 964, "relation_to_type": "type", "validated": true, "ani": 77.7269, "matched_fragments": 314, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum seropedicae", "strain": "strain=Z67", "accession": "GCA_001040945.1", "taxid": 964, "species_taxid": 964, "relation_to_type": "type", "validated": true, "ani": 77.6997, "matched_fragments": 327, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum autotrophicum", "strain": "strain=IAM 14942", "accession": "GCA_001189915.1", "taxid": 180195, "species_taxid": 180195, "relation_to_type": "type", "validated": true, "ani": 77.6851, "matched_fragments": 308, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum cavernae", "strain": "strain=K2R10-39", "accession": "GCA_003590875.1", "taxid": 2320862, "species_taxid": 2320862, "relation_to_type": "type", "validated": true, "ani": 77.6505, "matched_fragments": 286, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum robiniae", "strain": "strain=HZ10", "accession": "GCA_002213415.1", "taxid": 2014887, "species_taxid": 2014887, "relation_to_type": "type", "validated": true, "ani": 77.5482, "matched_fragments": 363, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum malthae", "strain": "strain=CC-AFH3", "accession": "GCA_015352985.1", "taxid": 1260987, "species_taxid": 1260987, "relation_to_type": "type", "validated": true, "ani": 77.545, "matched_fragments": 350, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas apoptosis", "strain": "strain=LX47W", "accession": "GCA_014042355.1", "taxid": 2758570, "species_taxid": 2758570, "relation_to_type": "type", "validated": true, "ani": 77.4857, "matched_fragments": 359, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium psychrotolerans", "strain": "strain=S3-2", "accession": "GCA_001677885.1", "taxid": 1747903, "species_taxid": 1747903, "relation_to_type": "type", "validated": true, "ani": 77.4259, "matched_fragments": 373, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella aceris", "strain": "strain=SAP-35", "accession": "GCA_011090165.1", "taxid": 2703883, "species_taxid": 2703883, "relation_to_type": 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