{
    "type": "genome",
    "identifier": "GCF_014636355.1",
    "organism": "Malaciobacter pacificus",
    "title": "Malaciobacter pacificus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014636355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00244917",
        "wgs_master": "BMEF00000000.1",
        "refseq_category": "na",
        "taxid": "1080223",
        "species_taxid": "1080223",
        "organism_name": "Malaciobacter pacificus",
        "infraspecific_name": "strain=CGMCC 1.11011",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/11",
        "asm_name": "ASM1463635v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014636355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/636/355/GCF_014636355.1_ASM1463635v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2526914",
        "genome_size_ungapped": "2526914",
        "gc_percent": "27.500000",
        "replicon_count": "0",
        "scaffold_count": "90",
        "contig_count": "90",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014636355.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "2593",
        "protein_coding_gene_count": "2522",
        "non_coding_gene_count": "52",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-11",
    "dateModified": "2020-09-11",
    "datePublished": "2020-09-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Malaciobacter pacificus"
        ],
        "sample_taxid": [
            "1080223"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.683 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2526914",
        "Number of Sequences": "90",
        "Longest Sequences (bp)": "261191",
        "N50 (bp)": "64504",
        "Gap Ratio (%)": "0.000356",
        "GCcontent (%)": "27.7",
        "Number of CDSs": "2521",
        "Average Protein Length": "306.2",
        "Coding Ratio (%)": "91.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Malaciobacter pacificus",
                "strain": "strain=CGMCC 1.11011",
                "accession": "GCA_014636355.1",
                "taxid": 1080223,
                "species_taxid": 1080223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 797,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Malaciobacter pacificus",
                "strain": "strain=LMG 26638",
                "accession": "GCA_004214795.1",
                "taxid": 1080223,
                "species_taxid": 1080223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.994,
                "matched_fragments": 800,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Arcobacter ellisii",
                "strain": "strain=CECT 7837",
                "accession": "GCA_004115815.1",
                "taxid": 913109,
                "species_taxid": 913109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0381,
                "matched_fragments": 491,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter ellisii",
                "strain": "strain=LMG 26155",
                "accession": "GCA_003544915.1",
                "taxid": 913109,
                "species_taxid": 913109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0196,
                "matched_fragments": 504,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter aquimarinus",
                "strain": "strain=CECT 8442",
                "accession": "GCA_004115795.1",
                "taxid": 1315211,
                "species_taxid": 1315211,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7934,
                "matched_fragments": 450,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter defluvii",
                "strain": "strain=CECT 7697",
                "accession": "GCA_004115775.1",
                "taxid": 873191,
                "species_taxid": 873191,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7626,
                "matched_fragments": 493,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter defluvii",
                "strain": "strain=LMG 25694",
                "accession": "GCA_013201725.1",
                "taxid": 873191,
                "species_taxid": 873191,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7521,
                "matched_fragments": 494,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter acticola",
                "strain": "strain=KCTC 52212",
                "accession": "GCA_013177675.1",
                "taxid": 1849015,
                "species_taxid": 1849015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6538,
                "matched_fragments": 488,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter suis",
                "strain": "strain=CECT 7833",
                "accession": "GCA_003544815.1",
                "taxid": 1278212,
                "species_taxid": 1278212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5243,
                "matched_fragments": 449,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter suis",
                "strain": "strain=CECT7833",
                "accession": "GCA_004023465.1",
                "taxid": 1278212,
                "species_taxid": 1278212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.439,
                "matched_fragments": 433,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter venerupis",
                "strain": "strain=LMG 26156",
                "accession": "GCA_013201665.1",
                "taxid": 1054033,
                "species_taxid": 1054033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4094,
                "matched_fragments": 489,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter venerupis",
                "strain": "strain=CECT7836",
                "accession": "GCA_004023405.1",
                "taxid": 1054033,
                "species_taxid": 1054033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3983,
                "matched_fragments": 482,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Poseidonibacter lekithochrous",
                "strain": "strain=DSM 100870",
                "accession": "GCA_013283835.1",
                "taxid": 1904463,
                "species_taxid": 1904463,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3816,
                "matched_fragments": 442,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aliarcobacter butzleri",
                "strain": "strain=RM4018",
                "accession": "GCA_000014025.1",
                "taxid": 28197,
                "species_taxid": 28197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1183,
                "matched_fragments": 395,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arcobacter caeni",
                "strain": "strain=RW17-10",
                "accession": "GCA_003063245.1",
                "taxid": 1912877,
                "species_taxid": 1912877,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0705,
                "matched_fragments": 431,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004214795.1",
                "gtdb_species": "s__Aliarcobacter pacificus",
                "ani": 99.994,
                "matched_fragments": 800,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003544915.1",
                "gtdb_species": "s__Aliarcobacter ellisii",
                "ani": 81.0237,
                "matched_fragments": 504,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013177635.1",
                "gtdb_species": "s__Aliarcobacter aquimarinus",
                "ani": 80.7781,
                "matched_fragments": 465,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013201725.1",
                "gtdb_species": "s__Aliarcobacter defluvii",
                "ani": 80.7644,
                "matched_fragments": 493,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "98.15",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_013201935.1",
                "gtdb_species": "s__Aliarcobacter cloacae",
                "ani": 80.7593,
                "matched_fragments": 473,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013177675.1",
                "gtdb_species": "s__Aliarcobacter acticola",
                "ani": 80.6486,
                "matched_fragments": 488,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002470185.1",
                "gtdb_species": "s__Poseidonibacter sp002470185",
                "ani": 80.6199,
                "matched_fragments": 343,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003063295.1",
                "gtdb_species": "s__Aliarcobacter lacus",
                "ani": 80.5042,
                "matched_fragments": 377,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003544815.1",
                "gtdb_species": "s__Aliarcobacter suis",
                "ani": 80.5036,
                "matched_fragments": 451,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018816105.1",
                "gtdb_species": "s__Aliarcobacter sp018816105",
                "ani": 80.4236,
                "matched_fragments": 436,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013201665.1",
                "gtdb_species": "s__Aliarcobacter venerupis",
                "ani": 80.4114,
                "matched_fragments": 489,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001956695.1",
                "gtdb_species": "s__Poseidonibacter parvus",
                "ani": 80.3948,
                "matched_fragments": 447,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013283835.1",
                "gtdb_species": "s__Poseidonibacter lekithochrous",
                "ani": 80.3898,
                "matched_fragments": 441,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_013373175.1",
                "gtdb_species": "s__Halarcobacter sp013373175",
                "ani": 80.1457,
                "matched_fragments": 387,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900187115.1",
                "gtdb_species": "s__Aliarcobacter butzleri",
                "ani": 80.1177,
                "matched_fragments": 395,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "96.98",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 50,
                "status": "-"
            },
            {
                "accession": "GCF_005771535.1",
                "gtdb_species": "s__Halarcobacter arenosus",
                "ani": 80.1106,
                "matched_fragments": 433,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004118855.1",
                "gtdb_species": "s__Halarcobacter sp004118855",
                "ani": 80.1068,
                "matched_fragments": 387,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003063245.1",
                "gtdb_species": "s__Aliarcobacter caeni",
                "ani": 80.0694,
                "matched_fragments": 431,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001895145.1",
                "gtdb_species": "s__Halarcobacter sp001895145",
                "ani": 79.8633,
                "matched_fragments": 389,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Malaciobacter",
        "pacificus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}