{ "type": "genome", "identifier": "GCF_014636395.1", "organism": "Gemmobacter megaterium", "title": "Gemmobacter megaterium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014636395.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244919", "wgs_master": "BMEH00000000.1", "refseq_category": "na", "taxid": "1086013", "species_taxid": "1086013", "organism_name": "Gemmobacter megaterium", "infraspecific_name": "strain=CGMCC 1.11024", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1463639v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014636395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/636/395/GCF_014636395.1_ASM1463639v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4121685", "genome_size_ungapped": "4121494", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014636395.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "4025", "protein_coding_gene_count": "3943", "non_coding_gene_count": "51", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmobacter megaterium" ], "sample_taxid": [ "1086013" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.133 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4121685", "Number of Sequences": "43", "Longest Sequences (bp)": "930715", "N50 (bp)": "435995", "Gap Ratio (%)": "0.004634", "GCcontent (%)": "64.9", "Number of CDSs": "3970", "Average Protein Length": "314.6", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmobacter megaterium", "strain": "strain=CGMCC 1.11024", "accession": "GCA_014636395.1", "taxid": 1086013, "species_taxid": 1086013, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 78.6478, "matched_fragments": 424, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 78.6282, "matched_fragments": 410, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter serpentinus", "strain": "strain=HB-1", "accession": "GCA_008973825.1", "taxid": 2652247, "species_taxid": 2652247, "relation_to_type": "type", "validated": true, "ani": 78.5024, "matched_fragments": 439, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 78.3701, "matched_fragments": 453, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter straminiformis", "strain": "strain=CAM-8", "accession": "GCA_014243445.1", "taxid": 2045119, "species_taxid": 2045119, "relation_to_type": "type", "validated": true, "ani": 78.3592, "matched_fragments": 378, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 78.2486, "matched_fragments": 413, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": 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540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 78.0521, "matched_fragments": 380, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquarius", "strain": "strain=HYN0069", "accession": "GCA_003060865.1", "taxid": 2169400, "species_taxid": 2169400, "relation_to_type": "type", "validated": true, "ani": 77.8494, "matched_fragments": 362, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter tilapiae", "strain": "strain=KCTC 23310", "accession": "GCA_014652215.1", "taxid": 875041, "species_taxid": 875041, "relation_to_type": "type", "validated": true, "ani": 77.3706, "matched_fragments": 298, "total_fragments": 1352, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900156815.1", "gtdb_species": 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