{ "type": "genome", "identifier": "GCF_014636475.1", "organism": "Halobacillus andaensis", "title": "Halobacillus andaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014636475.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244923", "wgs_master": "BMEL00000000.1", "refseq_category": "reference genome", "taxid": "1176239", "species_taxid": "1176239", "organism_name": "Halobacillus andaensis", "infraspecific_name": "strain=CGMCC 1.12153", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1463647v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014636475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/636/475/GCF_014636475.1_ASM1463647v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3914697", "genome_size_ungapped": "3914697", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014636475.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "3980", "protein_coding_gene_count": "3866", "non_coding_gene_count": "76", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Halobacillus andaensis" ], "sample_taxid": [ "1176239" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.115 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3914697", "Number of Sequences": "14", "Longest Sequences (bp)": "1423374", "N50 (bp)": "776176", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.8", "Number of CDSs": "3909", "Average Protein Length": "286.0", "Coding Ratio (%)": "85.7", "Number of rRNAs": "5", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobacillus andaensis", "strain": "strain=CGMCC 1.12153", "accession": "GCA_014636475.1", "taxid": 1176239, "species_taxid": 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"below_threshold" }, { "organism_name": "Aquibacillus kalidii", "strain": "strain=HU2P27", "accession": "GCA_014280935.1", "taxid": 2762597, "species_taxid": 2762597, "relation_to_type": "type", "validated": true, "ani": 76.6917, "matched_fragments": 59, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus alkalisoli", "strain": "strain=APA_J-2 (6-2)", "accession": "GCA_021556485.1", "taxid": 2925113, "species_taxid": 2925113, "relation_to_type": "type", "validated": true, "ani": 76.2099, "matched_fragments": 50, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014636475.1", "gtdb_species": "s__Halobacillus_A andaensis", "ani": 100.0, "matched_fragments": 1297, "total_fragments": 1298, "gtdb_taxonomy": 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