{
    "type": "genome",
    "identifier": "GCF_014636865.1",
    "organism": "Parapedobacter pyrenivorans",
    "title": "Parapedobacter pyrenivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014636865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00244930",
        "wgs_master": "BMER00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1305674",
        "species_taxid": "1305674",
        "organism_name": "Parapedobacter pyrenivorans",
        "infraspecific_name": "strain=CGMCC 1.12195",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1463686v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014636865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/636/865/GCF_014636865.1_ASM1463686v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5925444",
        "genome_size_ungapped": "5924286",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014636865.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4883",
        "protein_coding_gene_count": "4809",
        "non_coding_gene_count": "54",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parapedobacter pyrenivorans"
        ],
        "sample_taxid": [
            "1305674"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.692 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5925444",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "2998918",
        "N50 (bp)": "2998918",
        "Gap Ratio (%)": "0.019543",
        "GCcontent (%)": "48.6",
        "Number of CDSs": "4775",
        "Average Protein Length": "376.3",
        "Coding Ratio (%)": "91.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Parapedobacter pyrenivorans",
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            },
            {
                "organism_name": "Parapedobacter indicus",
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                "accession": "GCA_002934635.1",
                "taxid": 1477437,
                "species_taxid": 1477437,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter indicus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter defluvii",
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                "species_taxid": 2045106,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Parapedobacter lycopersici",
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                "accession": "GCA_024643285.1",
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                "matched_fragments": 185,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter koreensis",
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                "accession": "GCA_900109365.1",
                "taxid": 332977,
                "species_taxid": 332977,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Parapedobacter soli",
                "strain": "strain=KCTC 12984",
                "accession": "GCA_025460835.1",
                "taxid": 416955,
                "species_taxid": 416955,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6461,
                "matched_fragments": 373,
                "total_fragments": 1970,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter luteus",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapedobacter composti",
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                "accession": "GCA_900112315.1",
                "taxid": 623281,
                "species_taxid": 623281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5692,
                "matched_fragments": 214,
                "total_fragments": 1970,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_014636865.1",
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                "total_fragments": 1970,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Parapedobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_900113765.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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            },
            {
                "accession": "GCF_900457465.1",
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            },
            {
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                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}