{ "type": "genome", "identifier": "GCF_014637345.1", "organism": "Kroppenstedtia guangzhouensis", "title": "Kroppenstedtia guangzhouensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014637345.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244938", "wgs_master": "BMEX00000000.1", "refseq_category": "reference genome", "taxid": "1274356", "species_taxid": "1274356", "organism_name": "Kroppenstedtia guangzhouensis", "infraspecific_name": "strain=CGMCC 1.12404", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1463734v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014637345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/637/345/GCF_014637345.1_ASM1463734v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3582369", "genome_size_ungapped": "3582329", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014637345.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3625", "protein_coding_gene_count": "3452", "non_coding_gene_count": "77", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Kroppenstedtia guangzhouensis" ], "sample_taxid": [ "1274356" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.017 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3582369", "Number of Sequences": "86", "Longest Sequences (bp)": "492155", "N50 (bp)": "349632", "Gap Ratio (%)": "0.001368", "GCcontent (%)": "52.1", "Number of CDSs": "3589", "Average Protein Length": "276.8", "Coding Ratio (%)": "83.2", "Number of rRNAs": "1", "Number of tRNAs": "62", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kroppenstedtia guangzhouensis", "strain": "strain=CGMCC 1.12404", "accession": "GCA_014637345.1", "taxid": 1274356, "species_taxid": 1274356, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1155, "total_fragments": 1157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kroppenstedtia eburnea", "strain": "strain=DSM 45196", "accession": "GCA_013282215.1", "taxid": 714067, "species_taxid": 714067, "relation_to_type": "type", "validated": true, "ani": 88.9304, "matched_fragments": 925, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kroppenstedtia eburnea", "strain": "strain=DSM 45196", "accession": "GCA_900156615.1", "taxid": 714067, "species_taxid": 714067, "relation_to_type": "type", "validated": true, "ani": 88.8716, "matched_fragments": 912, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melghirimyces profundicolus", "strain": "strain=DSM 45787", "accession": "GCA_003054245.1", "taxid": 1242148, "species_taxid": 1242148, "relation_to_type": "type", "validated": true, "ani": 77.4999, "matched_fragments": 240, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melghirimyces algeriensis", "strain": "strain=DSM 45474", "accession": "GCA_900182565.1", "taxid": 910412, "species_taxid": 910412, "relation_to_type": "type", "validated": true, "ani": 77.1672, "matched_fragments": 141, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melghirimyces thermohalophilus", "strain": "strain=DSM 45514", "accession": "GCA_900102685.1", "taxid": 1236220, "species_taxid": 1236220, "relation_to_type": "type", "validated": true, "ani": 77.0952, "matched_fragments": 199, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polycladomyces abyssicola", "strain": "strain=JIR-001", "accession": "GCA_018326425.1", "taxid": 1125966, "species_taxid": 1125966, "relation_to_type": "type", "validated": true, "ani": 76.3116, "matched_fragments": 61, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planifilum fimeticola", "strain": "strain=DSM 44946", "accession": "GCA_003001905.1", "taxid": 201975, "species_taxid": 201975, "relation_to_type": "type", "validated": true, "ani": 76.0503, "matched_fragments": 96, "total_fragments": 1157, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014637345.1", "gtdb_species": "s__Kroppenstedtia guangzhouensis", "ani": 100.0, "matched_fragments": 1155, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__DSM-45169;g__Kroppenstedtia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013282215.1", "gtdb_species": "s__Kroppenstedtia eburnea", "ani": 88.9304, "matched_fragments": 925, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__DSM-45169;g__Kroppenstedtia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "98.85", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003054245.1", "gtdb_species": "s__Melghirimyces profundicolus", "ani": 77.5047, "matched_fragments": 239, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__DSM-45169;g__Melghirimyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900182565.1", "gtdb_species": "s__Melghirimyces algeriensis", "ani": 77.1889, "matched_fragments": 139, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__DSM-45169;g__Melghirimyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102685.1", "gtdb_species": "s__Melghirimyces thermohalophilus", "ani": 77.0952, "matched_fragments": 199, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__DSM-45169;g__Melghirimyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900106775.1", "gtdb_species": "s__Marininema mesophilum", "ani": 76.5518, "matched_fragments": 56, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__DSM-45169;g__Marininema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113175.1", "gtdb_species": "s__Planifilum fulgidum", "ani": 76.3132, "matched_fragments": 98, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__DSM-44946;g__Planifilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "99.26", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018326425.1", "gtdb_species": "s__Polycladomyces abyssicola", "ani": 76.3116, "matched_fragments": 61, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__JIR-001;g__Polycladomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003001905.1", "gtdb_species": "s__Planifilum fimeticola", "ani": 76.0503, "matched_fragments": 96, "total_fragments": 1157, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Thermoactinomycetales;f__DSM-44946;g__Planifilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 45.0, "optimum_tmp": 50.0, "optimum_ph": 6.75, "genome_size": 3532052.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Kroppenstedtia", "guangzhouensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }