{ "type": "genome", "identifier": "GCF_014637865.1", "organism": "Marinobacter halophilus", "title": "Marinobacter halophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014637865.1", "bioproject": "PRJNA224116", "biosample": "SAMD00244946", "wgs_master": "BMFE00000000.1", "refseq_category": "na", "taxid": "1323740", "species_taxid": "1323740", "organism_name": "Marinobacter halophilus", "infraspecific_name": "strain=CGMCC 1.12481", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1463786v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014637865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/637/865/GCF_014637865.1_ASM1463786v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3887149", "genome_size_ungapped": "3886856", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014637865.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "3582", "protein_coding_gene_count": "3497", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter halophilus" ], "sample_taxid": [ "1323740" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.101 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3887149", "Number of Sequences": "9", "Longest Sequences (bp)": "2069903", "N50 (bp)": "2069903", "Gap Ratio (%)": "0.007538", "GCcontent (%)": "56.9", "Number of CDSs": "3560", "Average Protein Length": "331.2", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter halophilus", "strain": "strain=CGMCC 1.12481", "accession": "GCA_014637865.1", "taxid": 1323740, "species_taxid": 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"status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 78.5726, "matched_fragments": 344, "total_fragments": 1291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter changyiensis", "strain": "strain=CLL7-20", "accession": "GCA_009193265.1", "taxid": 2604091, "species_taxid": 2604091, "relation_to_type": "type", "validated": true, "ani": 78.3043, "matched_fragments": 326, "total_fragments": 1291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gelidimuriae", "strain": "strain=BF04_CF-4", "accession": "GCA_000372805.1", "taxid": 2739064, "species_taxid": 2739064, "relation_to_type": "type", "validated": true, "ani": 78.2574, "matched_fragments": 295, "total_fragments": 1291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 76.0918, "matched_fragments": 104, "total_fragments": 1291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_024397575.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 76.0549, "matched_fragments": 87, "total_fragments": 1291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_900114065.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 75.9882, "matched_fragments": 85, "total_fragments": 1291, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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