{
    "type": "genome",
    "identifier": "GCF_014638095.1",
    "organism": "Muriicola marianensis",
    "title": "Muriicola marianensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014638095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00244950",
        "wgs_master": "BMFH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1324801",
        "species_taxid": "1324801",
        "organism_name": "Muriicola marianensis",
        "infraspecific_name": "strain=CGMCC 1.12606",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/11",
        "asm_name": "ASM1463809v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014638095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/638/095/GCF_014638095.1_ASM1463809v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3025964",
        "genome_size_ungapped": "3025777",
        "gc_percent": "48.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014638095.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "2769",
        "protein_coding_gene_count": "2719",
        "non_coding_gene_count": "48",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-11",
    "dateModified": "2020-09-11",
    "datePublished": "2020-09-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Muriicola marianensis"
        ],
        "sample_taxid": [
            "1324801"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.861 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3025964",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "2389011",
        "N50 (bp)": "2389011",
        "Gap Ratio (%)": "0.006180",
        "GCcontent (%)": "48.2",
        "Number of CDSs": "2715",
        "Average Protein Length": "342.2",
        "Coding Ratio (%)": "92.1",
        "Number of rRNAs": "4",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Muriicola marianensis",
                "strain": "strain=CGMCC 1.12606",
                "accession": "GCA_014638095.1",
                "taxid": 1324801,
                "species_taxid": 1324801,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1007,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Muriicola jejuensis",
                "strain": "strain=KCTC 22299",
                "accession": "GCA_010671595.1",
                "taxid": 504488,
                "species_taxid": 504488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4158,
                "matched_fragments": 648,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muriicola soli",
                "strain": "strain=MMS17-SY002",
                "accession": "GCA_004139715.1",
                "taxid": 2507538,
                "species_taxid": 2507538,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7571,
                "matched_fragments": 297,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zeaxanthinibacter enoshimensis",
                "strain": "strain=DSM 18435",
                "accession": "GCA_004362865.1",
                "taxid": 392009,
                "species_taxid": 392009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.154,
                "matched_fragments": 132,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Poritiphilus flavus",
                "strain": "strain=R33",
                "accession": "GCA_009901585.1",
                "taxid": 2697053,
                "species_taxid": 2697053,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9879,
                "matched_fragments": 119,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda oceanensis",
                "strain": "strain=40DY170",
                "accession": "GCA_003992595.1",
                "taxid": 2499163,
                "species_taxid": 2499163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8,
                "matched_fragments": 59,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robiginitalea biformata",
                "strain": "strain=HTCC2501",
                "accession": "GCA_000024125.1",
                "taxid": 252307,
                "species_taxid": 252307,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7491,
                "matched_fragments": 136,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda maritima",
                "strain": "strain=72",
                "accession": "GCA_003584135.1",
                "taxid": 2306998,
                "species_taxid": 2306998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7462,
                "matched_fragments": 74,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda hadalis",
                "strain": "strain=MT-229",
                "accession": "GCA_007785775.2",
                "taxid": 2597517,
                "species_taxid": 2597517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7376,
                "matched_fragments": 89,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda aurantiaca",
                "strain": "strain=HME9304",
                "accession": "GCA_003269425.1",
                "taxid": 1383885,
                "species_taxid": 1383885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7372,
                "matched_fragments": 50,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda sediminis",
                "strain": "strain=40Bstr401",
                "accession": "GCA_010500845.1",
                "taxid": 2696468,
                "species_taxid": 2696468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7201,
                "matched_fragments": 80,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda lutimaris",
                "strain": "strain=KCTC 22173",
                "accession": "GCA_003581615.1",
                "taxid": 475082,
                "species_taxid": 475082,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6603,
                "matched_fragments": 60,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robiginitalea sediminis",
                "strain": "strain=O458",
                "accession": "GCA_002198115.1",
                "taxid": 1982593,
                "species_taxid": 1982593,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6526,
                "matched_fragments": 129,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagihabitans pacificus",
                "strain": "strain=TP-CH-4",
                "accession": "GCA_009371985.2",
                "taxid": 2696054,
                "species_taxid": 2696054,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6299,
                "matched_fragments": 69,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinomicrobium weinanense",
                "strain": "strain=FJxs",
                "accession": "GCA_014518365.1",
                "taxid": 2842200,
                "species_taxid": 2842200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0933,
                "matched_fragments": 63,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptobacterium flavescens",
                "strain": "strain=KCTC 22160",
                "accession": "GCA_010671605.1",
                "taxid": 472055,
                "species_taxid": 472055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0867,
                "matched_fragments": 64,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pricia antarctica",
                "strain": "strain=DSM 23421",
                "accession": "GCA_900101815.1",
                "taxid": 641691,
                "species_taxid": 641691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.06,
                "matched_fragments": 53,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014638095.1",
                "gtdb_species": "s__Muriicola marianensis",
                "ani": 100.0,
                "matched_fragments": 1007,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_010671595.1",
                "gtdb_species": "s__Muriicola jejuensis",
                "ani": 80.4158,
                "matched_fragments": 648,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004139715.1",
                "gtdb_species": "s__Muriicola sp004139715",
                "ani": 77.7392,
                "matched_fragments": 297,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013042315.1",
                "gtdb_species": "s__Muriicola sp013042315",
                "ani": 77.3906,
                "matched_fragments": 248,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013042255.1",
                "gtdb_species": "s__Muriicola sp013042255",
                "ani": 77.1176,
                "matched_fragments": 184,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muriicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_009901585.1",
                "gtdb_species": "s__R33 sp009901585",
                "ani": 76.9879,
                "matched_fragments": 119,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__R33",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014243345.1",
                "gtdb_species": "s__Robiginitalea sp014243345",
                "ani": 76.7967,
                "matched_fragments": 141,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Robiginitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003992595.1",
                "gtdb_species": "s__Muricauda sp002452975",
                "ani": 76.7934,
                "matched_fragments": 58,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "99.01",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000024125.1",
                "gtdb_species": "s__Robiginitalea biformata",
                "ani": 76.7491,
                "matched_fragments": 136,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Robiginitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003584135.1",
                "gtdb_species": "s__Muricauda sp003584135",
                "ani": 76.7417,
                "matched_fragments": 73,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_010500845.1",
                "gtdb_species": "s__Muricauda sediminis",
                "ani": 76.7156,
                "matched_fragments": 79,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002198115.1",
                "gtdb_species": "s__Robiginitalea sediminis",
                "ani": 76.6373,
                "matched_fragments": 128,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Robiginitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009371985.2",
                "gtdb_species": "s__TP-CH-4 sp009371985",
                "ani": 76.6233,
                "matched_fragments": 68,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__TP-CH-4",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003426735.1",
                "gtdb_species": "s__Arenibacter sp003426735",
                "ani": 76.285,
                "matched_fragments": 56,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006227965.1",
                "gtdb_species": "s__Robiginitalea sp006227965",
                "ani": 76.1891,
                "matched_fragments": 75,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Robiginitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101815.1",
                "gtdb_species": "s__Pricia antarctica",
                "ani": 76.06,
                "matched_fragments": 53,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pricia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.347,
        "cell_length": 0.267,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.667,
        "optimum_ph": 7.75,
        "genome_size": 3299848.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Muriicola",
        "marianensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}