{
    "type": "genome",
    "identifier": "GCF_014639235.1",
    "organism": "Paenibacillus silvae",
    "title": "Paenibacillus silvae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014639235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00244965",
        "wgs_master": "BMFU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1325358",
        "species_taxid": "1325358",
        "organism_name": "Paenibacillus silvae",
        "infraspecific_name": "strain=CGMCC 1.12770",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1463923v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014639235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/639/235/GCF_014639235.1_ASM1463923v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6853520",
        "genome_size_ungapped": "6852920",
        "gc_percent": "47.000000",
        "replicon_count": "0",
        "scaffold_count": "43",
        "contig_count": "43",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014639235.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "6013",
        "protein_coding_gene_count": "5842",
        "non_coding_gene_count": "123",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus silvae"
        ],
        "sample_taxid": [
            "1325358"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.954 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6853520",
        "Number of Sequences": "43",
        "Longest Sequences (bp)": "1353784",
        "N50 (bp)": "744014",
        "Gap Ratio (%)": "0.008755",
        "GCcontent (%)": "46.9",
        "Number of CDSs": "6002",
        "Average Protein Length": "321.4",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "98",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus silvae",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Paenibacillus barcinonensis",
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                "species_taxid": 198119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7849,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus polysaccharolyticus",
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                "species_taxid": 582692,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanexedens",
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                "taxid": 528191,
                "species_taxid": 528191,
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                "validated": true,
                "ani": 81.4055,
                "matched_fragments": 1217,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus amylolyticus",
                "strain": "strain=NBRC 15957",
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                "species_taxid": 1451,
                "relation_to_type": "suspected-type",
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                "ani": 81.2825,
                "matched_fragments": 1220,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus pabuli",
                "strain": "strain=NBRC 13638",
                "accession": "GCA_001514495.1",
                "taxid": 1472,
                "species_taxid": 1472,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.9871,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanilyticus",
                "strain": "strain=LMG 21957",
                "accession": "GCA_013359935.1",
                "taxid": 248903,
                "species_taxid": 248903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9099,
                "matched_fragments": 984,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus illinoisensis",
                "strain": "strain=NBRC 15959",
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                "species_taxid": 59845,
                "relation_to_type": "type",
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                "matched_fragments": 980,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus aceti",
                "strain": "strain=L14",
                "accession": "GCA_003614185.1",
                "taxid": 1820010,
                "species_taxid": 1820010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9198,
                "matched_fragments": 115,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus aceti",
                "strain": "strain=CGMCC 1.15420",
                "accession": "GCA_014642755.1",
                "taxid": 1820010,
                "species_taxid": 1820010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7844,
                "matched_fragments": 109,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus alkaliterrae",
                "strain": "strain=DSM 17040",
                "accession": "GCA_021532375.1",
                "taxid": 320909,
                "species_taxid": 320909,
                "relation_to_type": "type",
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                "ani": 75.8007,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_014639235.1",
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                "matched_fragments": 2267,
                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "95.24",
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            },
            {
                "accession": "GCF_003217495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "min_intra_species_af": "1.00",
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            },
            {
                "accession": "GCF_007680605.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "gtdb_species": "s__Paenibacillus sp017512705",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
        "doubling_h": 0.565,
        "growth_tmp": 30.106,
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        "facultative_respiration": 0.347,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
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        "silvae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}