{
    "type": "genome",
    "identifier": "GCF_014640335.1",
    "organism": "Edaphobacter dinghuensis",
    "title": "Edaphobacter dinghuensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014640335.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00244997",
        "wgs_master": "BMGT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1560005",
        "species_taxid": "1560005",
        "organism_name": "Edaphobacter dinghuensis",
        "infraspecific_name": "strain=CGMCC 1.12997",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464033v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014640335.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/640/335/GCF_014640335.1_ASM1464033v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4535631",
        "genome_size_ungapped": "4535631",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014640335.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "3732",
        "protein_coding_gene_count": "3666",
        "non_coding_gene_count": "55",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Edaphobacter dinghuensis"
        ],
        "sample_taxid": [
            "1560005"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.288 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4535631",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "1444627",
        "N50 (bp)": "1438037",
        "Gap Ratio (%)": "0.000066",
        "GCcontent (%)": "56.9",
        "Number of CDSs": "3731",
        "Average Protein Length": "355.7",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            {
                "organism_name": "Edaphobacter lichenicola",
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                "accession": "GCA_025264645.1",
                "taxid": 2051959,
                "species_taxid": 2051959,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "accession": "GCA_000745965.1",
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                "species_taxid": 570835,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter flagellatus",
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                "taxid": 1933044,
                "species_taxid": 1933044,
                "relation_to_type": "type",
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                "matched_fragments": 309,
                "total_fragments": 1507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter modestus",
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                "accession": "GCA_004217555.1",
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                "species_taxid": 388466,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Edaphobacter acidisoli",
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                "accession": "GCA_014642855.1",
                "taxid": 2040573,
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                "validated": true,
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                "matched_fragments": 405,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella mallensis",
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                "accession": "GCA_000178955.2",
                "taxid": 940614,
                "species_taxid": 940614,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 290,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella sibirica",
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                "accession": "GCA_004115155.1",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella rosea",
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                "accession": "GCA_900188085.1",
                "taxid": 474952,
                "species_taxid": 474952,
                "relation_to_type": "type",
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                "ani": 77.7758,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicella tundricola",
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                "species_taxid": 940615,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "strain": "strain=DSM 21001",
                "accession": "GCA_900114625.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bryocella elongata",
                "strain": "strain=DSM 22489",
                "accession": "GCA_900108185.1",
                "taxid": 863522,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7073,
                "matched_fragments": 223,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_014640335.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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}