{ "type": "genome", "identifier": "GCF_014641415.1", "organism": "Massilia psychrophila", "title": "Massilia psychrophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014641415.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245026", "wgs_master": "BMHS00000000.1", "refseq_category": "na", "taxid": "1603353", "species_taxid": "1603353", "organism_name": "Massilia psychrophila", "infraspecific_name": "strain=CGMCC 1.15196", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464141v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014641415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/641/415/GCF_014641415.1_ASM1464141v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4743467", "genome_size_ungapped": "4743467", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014641415.1-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "4428", "protein_coding_gene_count": "4216", "non_coding_gene_count": "65", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia psychrophila" ], "sample_taxid": [ "1603353" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.318 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 6.25, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4743467", "Number of Sequences": "115", "Longest Sequences (bp)": "410969", "N50 (bp)": "140003", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.6", "Number of CDSs": "4278", "Average Protein Length": "321.4", "Coding Ratio (%)": "87.0", "Number of rRNAs": "0", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia psychrophila", "strain": "strain=CGMCC 1.15196", "accession": "GCA_014641415.1", "taxid": 1603353, "species_taxid": 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82.4162, "matched_fragments": 955, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia glaciei", "strain": "strain=B448-2", "accession": "GCA_003011895.2", "taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 82.0205, "matched_fragments": 849, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 81.9936, "matched_fragments": 962, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia soli", "strain": "strain=R798", "accession": "GCA_016809835.2", "taxid": 2792854, "species_taxid": 2792854, "relation_to_type": "type", "validated": true, "ani": 81.977, "matched_fragments": 870, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia violaceinigra", "strain": "strain=B2", "accession": "GCA_002752675.1", "taxid": 2045208, "species_taxid": 2045208, "relation_to_type": "type", "validated": true, "ani": 81.9242, "matched_fragments": 921, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 81.8671, "matched_fragments": 801, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia rubra", "strain": "strain=CCM 8692", "accession": "GCA_011682065.1", "taxid": 2607910, "species_taxid": 2607910, "relation_to_type": "type", "validated": true, "ani": 81.8536, "matched_fragments": 949, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia frigida", "strain": "strain=CCM 8695", "accession": "GCA_011682175.1", "taxid": 2609281, "species_taxid": 2609281, "relation_to_type": "type", "validated": true, "ani": 81.8258, "matched_fragments": 948, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 81.1124, "matched_fragments": 826, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 80.8382, "matched_fragments": 854, "total_fragments": 1533, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia oculi", "strain": "strain=CCUG 43427", "accession": 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