{ "type": "genome", "identifier": "GCF_014641655.1", "organism": "Blastomonas marina", "title": "Blastomonas marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014641655.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245037", "wgs_master": "BMID00000000.1", "refseq_category": "na", "taxid": "1867408", "species_taxid": "1867408", "organism_name": "Blastomonas marina", "infraspecific_name": "strain=CGMCC 1.15297", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1464165v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014641655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/641/655/GCF_014641655.1_ASM1464165v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2634902", "genome_size_ungapped": "2634737", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014641655.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2566", "protein_coding_gene_count": "2503", "non_coding_gene_count": "51", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Blastomonas marina" ], "sample_taxid": [ "1867408" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.722 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2634902", "Number of Sequences": "56", "Longest Sequences (bp)": "2576820", "N50 (bp)": "2576820", "Gap Ratio (%)": "0.006262", "GCcontent (%)": "64.9", "Number of CDSs": "2534", "Average Protein Length": "315.7", "Coding Ratio (%)": "91.1", "Number of rRNAs": "6", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, 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79.9072, "matched_fragments": 452, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 79.8475, "matched_fragments": 418, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 79.639, "matched_fragments": 431, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 79.6379, "matched_fragments": 415, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 79.6264, "matched_fragments": 432, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.5692, "matched_fragments": 418, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 79.5431, "matched_fragments": 426, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania seohaensis", "strain": "strain=SW-135", "accession": "GCA_002795865.1", "taxid": 266951, "species_taxid": 266951, "relation_to_type": "type", "validated": true, "ani": 79.5373, "matched_fragments": 352, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_000714795.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 79.4917, "matched_fragments": 426, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 79.4628, "matched_fragments": 437, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania soli", 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"taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.1943, "matched_fragments": 394, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter xanthus", "strain": "strain=CCTCC AB 2015396", "accession": "GCA_003584015.1", "taxid": 1784712, "species_taxid": 1784712, "relation_to_type": "type", "validated": true, "ani": 79.1755, "matched_fragments": 363, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 79.1098, "matched_fragments": 372, "total_fragments": 861, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter donghaensis", "strain": "strain=DSM 16220", "accession": "GCA_002155425.1", "taxid": 267135, "species_taxid": 267135, 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