{ "type": "genome", "identifier": "GCF_014641695.1", "organism": "Nitratireductor aestuarii", "title": "Nitratireductor aestuarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014641695.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245040", "wgs_master": "BMIF00000000.1", "refseq_category": "reference genome", "taxid": "1735103", "species_taxid": "1735103", "organism_name": "Nitratireductor aestuarii", "infraspecific_name": "strain=CGMCC 1.15320", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464169v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014641695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/641/695/GCF_014641695.1_ASM1464169v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4516511", "genome_size_ungapped": "4516417", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014641695.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "4264", "protein_coding_gene_count": "4124", "non_coding_gene_count": "62", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Nitratireductor aestuarii" ], "sample_taxid": [ "1735103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.274 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4516511", "Number of Sequences": "74", "Longest Sequences (bp)": "760342", "N50 (bp)": "294970", "Gap Ratio (%)": "0.002081", "GCcontent (%)": "60.3", "Number of CDSs": "4180", "Average Protein Length": "316.8", "Coding Ratio (%)": "88.0", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nitratireductor aestuarii", "strain": "strain=CGMCC 1.15320", "accession": "GCA_014641695.1", "taxid": 1735103, "species_taxid": 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"status": "below_threshold" }, { "organism_name": "Chelativorans alearense", "strain": "strain=UJN715", "accession": "GCA_010993735.1", "taxid": 2681495, "species_taxid": 2681495, "relation_to_type": "type", "validated": true, "ani": 77.8224, "matched_fragments": 391, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sediminum", "strain": "strain=KCTC 42205", "accession": "GCA_013240295.1", "taxid": 1849104, "species_taxid": 1849104, "relation_to_type": "type", "validated": true, "ani": 77.8112, "matched_fragments": 327, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor indicus", "strain": "strain=C115", "accession": "GCA_000300515.1", "taxid": 721133, "species_taxid": 721133, "relation_to_type": "type", "validated": true, "ani": 77.7851, "matched_fragments": 255, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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11603", "accession": "GCA_004363725.1", "taxid": 69279, "species_taxid": 69279, "relation_to_type": "type", "validated": true, "ani": 77.667, "matched_fragments": 314, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 77.6448, "matched_fragments": 316, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 77.435, "matched_fragments": 320, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, 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