{
    "type": "genome",
    "identifier": "GCF_014641715.1",
    "organism": "Polaromonas eurypsychrophila",
    "title": "Polaromonas eurypsychrophila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014641715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245041",
        "wgs_master": "BMIG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1614635",
        "species_taxid": "1614635",
        "organism_name": "Polaromonas eurypsychrophila",
        "infraspecific_name": "strain=CGMCC 1.15322",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464171v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014641715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/641/715/GCF_014641715.1_ASM1464171v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4161929",
        "genome_size_ungapped": "4161778",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "36",
        "contig_count": "36",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014641715.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "3991",
        "protein_coding_gene_count": "3860",
        "non_coding_gene_count": "47",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Polaromonas eurypsychrophila"
        ],
        "sample_taxid": [
            "1614635"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.165 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4161929",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "522332",
        "N50 (bp)": "265986",
        "Gap Ratio (%)": "0.003628",
        "GCcontent (%)": "61.6",
        "Number of CDSs": "3915",
        "Average Protein Length": "313.7",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Polaromonas eurypsychrophila",
                "strain": "strain=CGMCC 1.15322",
                "accession": "GCA_014641715.1",
                "taxid": 1614635,
                "species_taxid": 1614635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1363,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Polaromonas jejuensis",
                "strain": "strain=NBRC 106434",
                "accession": "GCA_001598235.1",
                "taxid": 457502,
                "species_taxid": 457502,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6963,
                "matched_fragments": 686,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaromonas naphthalenivorans",
                "strain": "strain=CJ2",
                "accession": "GCA_000015505.1",
                "taxid": 216465,
                "species_taxid": 216465,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4237,
                "matched_fragments": 635,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga palleronii",
                "strain": "strain=NBRC 102513",
                "accession": "GCA_001571225.1",
                "taxid": 65655,
                "species_taxid": 65655,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0503,
                "matched_fragments": 539,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax boronicumulans",
                "strain": "strain=NBRC 103145",
                "accession": "GCA_001591345.1",
                "taxid": 436515,
                "species_taxid": 436515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.971,
                "matched_fragments": 532,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax beijingensis",
                "strain": "strain=502",
                "accession": "GCA_003951285.1",
                "taxid": 2496117,
                "species_taxid": 2496117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8995,
                "matched_fragments": 570,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
                "strain": "strain=MAH-25",
                "accession": "GCA_009758015.1",
                "taxid": 2682844,
                "species_taxid": 2682844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8531,
                "matched_fragments": 565,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7672,
                "matched_fragments": 517,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax soli",
                "strain": "strain=DSM 25157",
                "accession": "GCA_900107605.1",
                "taxid": 592050,
                "species_taxid": 592050,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7565,
                "matched_fragments": 461,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter humi",
                "strain": "strain=18x22-1",
                "accession": "GCA_004681975.1",
                "taxid": 2530451,
                "species_taxid": 2530451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7299,
                "matched_fragments": 524,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curvibacter lanceolatus",
                "strain": "strain=ATCC 14669",
                "accession": "GCA_000381265.1",
                "taxid": 86182,
                "species_taxid": 86182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7267,
                "matched_fragments": 524,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax wautersii",
                "strain": "strain=DSM 27981",
                "accession": "GCA_900113035.1",
                "taxid": 1177982,
                "species_taxid": 1177982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7107,
                "matched_fragments": 496,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax guangxiensis",
                "strain": "strain=DSM 27352",
                "accession": "GCA_003952165.1",
                "taxid": 1775474,
                "species_taxid": 1775474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7024,
                "matched_fragments": 559,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6779,
                "matched_fragments": 405,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudorhodoferax soli",
                "strain": "strain=DSM 21634",
                "accession": "GCA_003337555.1",
                "taxid": 545864,
                "species_taxid": 545864,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5769,
                "matched_fragments": 568,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax gossypii",
                "strain": "strain=DSM 100435",
                "accession": "GCA_003965815.1",
                "taxid": 1679495,
                "species_taxid": 1679495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5709,
                "matched_fragments": 462,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax radicis",
                "strain": "strain=N35",
                "accession": "GCA_000204195.2",
                "taxid": 758826,
                "species_taxid": 758826,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5451,
                "matched_fragments": 497,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4453,
                "matched_fragments": 498,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax delafieldii",
                "strain": "strain=DSM 64",
                "accession": "GCA_007993815.1",
                "taxid": 47920,
                "species_taxid": 47920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3214,
                "matched_fragments": 528,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax avenae subsp. avenae",
                "strain": "strain=ATCC 19860",
                "accession": "GCA_000176855.2",
                "taxid": 80870,
                "species_taxid": 80867,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2736,
                "matched_fragments": 425,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax temperans",
                "strain": "strain=DSM 7270",
                "accession": "GCA_006716905.1",
                "taxid": 80878,
                "species_taxid": 80878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.26,
                "matched_fragments": 417,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaromonas vacuolata",
                "strain": "strain=KCTC 22033",
                "accession": "GCA_012584515.1",
                "taxid": 37448,
                "species_taxid": 37448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.374,
                "matched_fragments": 222,
                "total_fragments": 1368,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014641715.1",
                "gtdb_species": "s__Polaromonas eurypsychrophila",
                "ani": 100.0,
                "matched_fragments": 1363,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013824015.1",
                "gtdb_species": "s__Polaromonas sp013824015",
                "ani": 85.7906,
                "matched_fragments": 870,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013817205.1",
                "gtdb_species": "s__Polaromonas sp013817205",
                "ani": 84.4478,
                "matched_fragments": 870,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002379095.1",
                "gtdb_species": "s__Polaromonas sp002379095",
                "ani": 83.7467,
                "matched_fragments": 928,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002379085.1",
                "gtdb_species": "s__Polaromonas sp002379085",
                "ani": 83.5967,
                "matched_fragments": 947,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002278925.1",
                "gtdb_species": "s__Polaromonas sp002278925",
                "ani": 83.5932,
                "matched_fragments": 923,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002001015.1",
                "gtdb_species": "s__Polaromonas sp002001015",
                "ani": 82.1107,
                "matched_fragments": 848,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000282655.1",
                "gtdb_species": "s__Polaromonas sp000282655",
                "ani": 81.3029,
                "matched_fragments": 770,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003711205.1",
                "gtdb_species": "s__Polaromonas sp003711205",
                "ani": 81.2677,
                "matched_fragments": 755,
                "total_fragments": 1368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polaromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.055,
        "cell_length": 0.121,
        "doubling_h": null,
        "growth_tmp": 18.857,
        "optimum_tmp": 19.7,
        "optimum_ph": 6.85,
        "genome_size": 5249534.7,
        "gc_content": 60.395,
        "coding_genes": 4865.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.166,
        "range_salinity": null,
        "facultative_respiration": 0.142,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.5,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Polaromonas",
        "eurypsychrophila"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}