{ "type": "genome", "identifier": "GCF_014641945.1", "organism": "Marinobacterium zhoushanense", "title": "Marinobacterium zhoushanense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014641945.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245044", "wgs_master": "BMIJ00000000.1", "refseq_category": "reference genome", "taxid": "1679163", "species_taxid": "1679163", "organism_name": "Marinobacterium zhoushanense", "infraspecific_name": "strain=CGMCC 1.15341", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464194v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014641945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/641/945/GCF_014641945.1_ASM1464194v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4734355", "genome_size_ungapped": "4733218", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014641945.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4422", "protein_coding_gene_count": "4308", "non_coding_gene_count": "86", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacterium zhoushanense" ], "sample_taxid": [ "1679163" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.340 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4734355", "Number of Sequences": "29", "Longest Sequences (bp)": "915997", "N50 (bp)": "548647", "Gap Ratio (%)": "0.024016", "GCcontent (%)": "58.4", "Number of CDSs": "4342", "Average Protein Length": "327.0", "Coding Ratio (%)": "90.0", "Number of rRNAs": "1", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacterium zhoushanense", "strain": "strain=CGMCC 1.15341", "accession": "GCA_014641945.1", "taxid": 1679163, "species_taxid": 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306, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium nitratireducens", "strain": "strain=CGMCC 1.7286", "accession": "GCA_014645375.1", "taxid": 518897, "species_taxid": 518897, "relation_to_type": "type", "validated": true, "ani": 78.7172, "matched_fragments": 424, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium stanieri", "strain": "strain=DSM 7027", "accession": "GCA_900155945.1", "taxid": 49186, "species_taxid": 49186, "relation_to_type": "type", "validated": true, "ani": 78.562, "matched_fragments": 345, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium georgiense", "strain": "strain=DSM 11526", "accession": "GCA_900107855.1", "taxid": 48076, "species_taxid": 48076, "relation_to_type": "type", "validated": true, "ani": 78.4452, "matched_fragments": 288, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium halophilum", "strain": "strain=DSM 17586", "accession": "GCA_003014615.1", "taxid": 267374, "species_taxid": 267374, "relation_to_type": "type", "validated": true, "ani": 78.3724, "matched_fragments": 302, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium rhizophilum", "strain": "strain=DSM 18822", "accession": "GCA_000378045.1", "taxid": 420402, "species_taxid": 420402, "relation_to_type": "type", "validated": true, "ani": 77.989, "matched_fragments": 322, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium aestuarii", "strain": "strain=ST58-10", "accession": "GCA_001651805.1", "taxid": 1821621, "species_taxid": 1821621, "relation_to_type": "type", "validated": true, "ani": 77.4866, "matched_fragments": 329, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium profundum", "strain": "strain=PAMC 27536", "accession": "GCA_001528745.1", "taxid": 1714300, "species_taxid": 1714300, "relation_to_type": "type", "validated": true, "ani": 77.3252, "matched_fragments": 276, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 77.1156, "matched_fragments": 226, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 77.0912, "matched_fragments": 193, "total_fragments": 1566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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