{ "tc_result": [ { "organism_name": "Pedobacter quisquiliarum", "strain": "strain=CGMCC 1.15343", "accession": "GCA_014642175.1", "taxid": 1834438, "species_taxid": 1834438, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1241, "total_fragments": 1242, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pedobacter duraquae", "strain": "strain=DSM 19034", "accession": "GCA_004362245.1", "taxid": 425511, "species_taxid": 425511, "relation_to_type": "type", "validated": true, "ani": 78.9622, "matched_fragments": 203, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter antarcticus", "strain": "strain=4BY", "accession": "GCA_000722885.1", "taxid": 34086, "species_taxid": 34086, "relation_to_type": "type", "validated": true, "ani": 78.8234, "matched_fragments": 139, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter antarcticus", "strain": "strain=ATCC 51969", "accession": "GCA_900112985.1", "taxid": 34086, "species_taxid": 34086, "relation_to_type": "type", "validated": true, "ani": 78.8184, "matched_fragments": 153, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter westerhofensis", "strain": "strain=DSM 19036", "accession": "GCA_900182595.1", "taxid": 425512, "species_taxid": 425512, "relation_to_type": "type", "validated": true, "ani": 78.5662, "matched_fragments": 184, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter hiemivivus", "strain": "strain=RP-3-8", "accession": "GCA_004331685.1", "taxid": 2530454, "species_taxid": 2530454, "relation_to_type": "type", "validated": true, "ani": 78.3728, "matched_fragments": 159, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nyackensis", "strain": "strain=DSM 19625", "accession": "GCA_900176505.1", "taxid": 475255, "species_taxid": 475255, "relation_to_type": "type", "validated": true, "ani": 78.3432, "matched_fragments": 162, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter lusitanus", "strain": "strain=NL19", "accession": "GCA_000832545.1", "taxid": 1503925, "species_taxid": 1503925, "relation_to_type": "type", "validated": true, "ani": 78.3107, "matched_fragments": 159, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter foliorum", "strain": "strain=LMG 31463", "accession": "GCA_013266735.1", "taxid": 2739058, "species_taxid": 2739058, "relation_to_type": "type", "validated": true, "ani": 78.2108, "matched_fragments": 155, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryoconitis", "strain": "strain=DSM 14825", "accession": "GCA_003259615.1", "taxid": 188932, "species_taxid": 188932, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1762, "matched_fragments": 169, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter gandavensis", "strain": "strain=LMG 31462", "accession": "GCA_014172405.1", "taxid": 2679963, "species_taxid": 2679963, "relation_to_type": "type", "validated": true, "ani": 78.1618, "matched_fragments": 180, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter caeni", "strain": "strain=DSM 16990", "accession": "GCA_900129215.1", "taxid": 288992, "species_taxid": 288992, "relation_to_type": "type", "validated": true, "ani": 78.1144, "matched_fragments": 190, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter panaciterrae", "strain": "strain=LMG 23400", "accession": "GCA_013204795.1", "taxid": 363849, "species_taxid": 363849, "relation_to_type": "type", "validated": true, "ani": 78.1143, "matched_fragments": 160, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter frigoris", "strain": "strain=RP-3-15", "accession": "GCA_005116445.1", "taxid": 2571272, "species_taxid": 2571272, "relation_to_type": "type", "validated": true, "ani": 77.9669, "matched_fragments": 172, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter helvus", "strain": "strain=P-25", "accession": "GCA_005925325.1", "taxid": 2563444, "species_taxid": 2563444, "relation_to_type": "type", "validated": true, "ani": 77.6878, "matched_fragments": 87, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter frigiditerrae", "strain": "strain=RP-1-13", "accession": "GCA_004331645.1", "taxid": 2530452, "species_taxid": 2530452, "relation_to_type": "type", "validated": true, "ani": 77.6341, "matched_fragments": 115, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychroterrae", "strain": "strain=RP-1-14", "accession": "GCA_004331695.1", "taxid": 2530453, "species_taxid": 2530453, "relation_to_type": "type", "validated": true, "ani": 77.6245, "matched_fragments": 143, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter soli", "strain": "strain=DSM 18609", "accession": "GCA_900101435.1", "taxid": 390242, "species_taxid": 390242, "relation_to_type": "type", "validated": true, "ani": 77.394, "matched_fragments": 123, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter ureilyticus", "strain": "strain=THG-T11", "accession": "GCA_005925345.1", "taxid": 1393051, "species_taxid": 1393051, "relation_to_type": "type", "validated": true, "ani": 77.2745, "matched_fragments": 93, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 76.379, "matched_fragments": 60, "total_fragments": 1242, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014642175.1", "gtdb_species": "s__Pedobacter quisquiliarum", "ani": 100.0, "matched_fragments": 1241, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.56", "min_intra_species_ani": "96.56", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_002320935.1", "gtdb_species": "s__Pedobacter sp002320935", "ani": 82.0073, "matched_fragments": 668, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002333205.1", "gtdb_species": "s__Pedobacter sp002333205", "ani": 81.9019, "matched_fragments": 642, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004362245.1", "gtdb_species": "s__Pedobacter duraquae", "ani": 78.9622, "matched_fragments": 203, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112985.1", "gtdb_species": "s__Pedobacter antarcticus", "ani": 78.8175, "matched_fragments": 152, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "98.80", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900176505.1", "gtdb_species": "s__Pedobacter nyackensis", "ani": 78.3432, "matched_fragments": 162, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001412655.1", "gtdb_species": "s__Pedobacter sp001412655", "ani": 78.2034, "matched_fragments": 186, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014207135.1", "gtdb_species": "s__Pedobacter cryoconitis_D", "ani": 78.1828, "matched_fragments": 154, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014172405.1", "gtdb_species": "s__Pedobacter gandavensis", "ani": 78.1404, "matched_fragments": 181, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129215.1", "gtdb_species": "s__Pedobacter caeni", "ani": 78.1325, "matched_fragments": 189, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001721645.1", "gtdb_species": "s__Pedobacter steynii_A", "ani": 78.0971, "matched_fragments": 190, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001636695.1", "gtdb_species": "s__Pedobacter panaciterrae_A", "ani": 78.0936, "matched_fragments": 158, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004364225.1", "gtdb_species": "s__Pedobacter sp004364225", "ani": 78.0761, "matched_fragments": 181, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765875.1", "gtdb_species": "s__Pedobacter sp009765875", "ani": 78.0244, "matched_fragments": 167, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015223055.1", "gtdb_species": "s__Pedobacter sp015223055", "ani": 78.0103, "matched_fragments": 174, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000523515.1", "gtdb_species": "s__Pedobacter sp000523515", "ani": 77.8474, "matched_fragments": 169, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003208655.1", "gtdb_species": "s__Pedobacter nutrimenti", "ani": 77.8309, "matched_fragments": 176, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003061025.1", "gtdb_species": "s__Pedobacter sp003061025", "ani": 77.805, "matched_fragments": 147, "total_fragments": 1242, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }