{ "type": "genome", "identifier": "GCF_014642675.1", "organism": "Nesterenkonia cremea", "title": "Nesterenkonia cremea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014642675.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245054", "wgs_master": "BMIS00000000.1", "refseq_category": "reference genome", "taxid": "1882340", "species_taxid": "1882340", "organism_name": "Nesterenkonia cremea", "infraspecific_name": "strain=CGMCC 1.15388", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1464267v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014642675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/642/675/GCF_014642675.1_ASM1464267v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3083458", "genome_size_ungapped": "3083458", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014642675.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2878", "protein_coding_gene_count": "2765", "non_coding_gene_count": "59", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Nesterenkonia cremea" ], "sample_taxid": [ "1882340" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.844 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3083458", "Number of Sequences": "39", "Longest Sequences (bp)": "499392", "N50 (bp)": "210113", "Gap Ratio (%)": "0.000227", "GCcontent (%)": "66.9", "Number of CDSs": "2828", "Average Protein Length": "331.0", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia cremea", "strain": "strain=CGMCC 1.15388", "accession": "GCA_014642675.1", "taxid": 1882340, "species_taxid": 1882340, 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80.1954, "matched_fragments": 474, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sedimenti", "strain": "strain=MY13", "accession": "GCA_012641515.1", "taxid": 1463632, "species_taxid": 1463632, "relation_to_type": "type", "validated": true, "ani": 80.1231, "matched_fragments": 400, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia halophila", "strain": "strain=DSM 16378", "accession": "GCA_009467795.1", "taxid": 302044, "species_taxid": 302044, "relation_to_type": "type", "validated": true, "ani": 80.0716, "matched_fragments": 383, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia populi", "strain": "strain=DSM 27959", "accession": "GCA_007994735.1", "taxid": 1591087, "species_taxid": 1591087, "relation_to_type": "type", "validated": true, "ani": 80.0041, "matched_fragments": 429, "total_fragments": 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