{
    "type": "genome",
    "identifier": "GCF_014642835.1",
    "organism": "Dyella nitratireducens",
    "title": "Dyella nitratireducens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014642835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245062",
        "wgs_master": "BMJA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1849580",
        "species_taxid": "1849580",
        "organism_name": "Dyella nitratireducens",
        "infraspecific_name": "strain=CGMCC 1.15439",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464283v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014642835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/642/835/GCF_014642835.1_ASM1464283v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5681128",
        "genome_size_ungapped": "5679557",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "14",
        "contig_count": "14",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014642835.1-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "4792",
        "protein_coding_gene_count": "4711",
        "non_coding_gene_count": "57",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dyella nitratireducens"
        ],
        "sample_taxid": [
            "1849580"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.592 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
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    "_dfast": {
        "Total Sequence Length (bp)": "5681128",
        "Number of Sequences": "14",
        "Longest Sequences (bp)": "2459630",
        "N50 (bp)": "1320813",
        "Gap Ratio (%)": "0.027653",
        "GCcontent (%)": "59.8",
        "Number of CDSs": "4773",
        "Average Protein Length": "343.0",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Dyella nitratireducens",
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            },
            {
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                "species_taxid": 1927959,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Dyella acidiphila",
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                "status": "below_threshold"
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            {
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                "taxid": 1927958,
                "species_taxid": 1927958,
                "relation_to_type": "type",
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                "matched_fragments": 960,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella psychrodurans",
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                "accession": "GCA_003363265.1",
                "taxid": 1927960,
                "species_taxid": 1927960,
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                "matched_fragments": 882,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella flava",
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                "accession": "GCA_016904955.1",
                "taxid": 1920170,
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                "validated": true,
                "ani": 81.21,
                "matched_fragments": 844,
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            },
            {
                "organism_name": "Dyella mobilis",
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                "taxid": 1849582,
                "species_taxid": 1849582,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella caseinilytica",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Dyella japonica",
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                "taxid": 231455,
                "species_taxid": 231455,
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                "validated": true,
                "ani": 79.7634,
                "matched_fragments": 513,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dyella telluris",
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                "matched_fragments": 632,
                "total_fragments": 1887,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frateuria flava",
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                "accession": "GCA_017837635.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas lumbrici",
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                "accession": "GCA_006476065.1",
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                "species_taxid": 2559601,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5058,
                "matched_fragments": 186,
                "total_fragments": 1887,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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                "accession": "GCF_014642835.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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    "_bac2feature": {
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}