{ "type": "genome", "identifier": "GCF_014642915.1", "organism": "Flavobacterium suaedae", "title": "Flavobacterium suaedae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014642915.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245066", "wgs_master": "BMJE00000000.1", "refseq_category": "reference genome", "taxid": "1767027", "species_taxid": "1767027", "organism_name": "Flavobacterium suaedae", "infraspecific_name": "strain=CGMCC 1.15461", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1464291v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014642915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/642/915/GCF_014642915.1_ASM1464291v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3179719", "genome_size_ungapped": "3179719", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014642915.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2954", "protein_coding_gene_count": "2881", "non_coding_gene_count": "54", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium suaedae" ], "sample_taxid": [ "1767027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.890 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3179719", "Number of Sequences": "25", "Longest Sequences (bp)": "660120", "N50 (bp)": "525820", "Gap Ratio (%)": "0.000063", "GCcontent (%)": "35.8", "Number of CDSs": "2882", "Average Protein Length": "331.4", "Coding Ratio (%)": "90.1", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium suaedae", "strain": "strain=CGMCC 1.15461", "accession": "GCA_014642915.1", "taxid": 1767027, "species_taxid": 1767027, 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1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 76.7842, "matched_fragments": 94, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014642915.1", "gtdb_species": "s__Flavobacterium suaedae", "ani": 100.0, "matched_fragments": 1050, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004634195.1", 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