{ "tc_result": [ { "organism_name": "Hoyosella rhizosphaerae", "strain": "strain=CGMCC 1.15478", "accession": "GCA_014643175.1", "taxid": 1755582, "species_taxid": 1755582, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1175, "total_fragments": 1175, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hoyosella rhizosphaerae", "strain": "strain=J12GA03", "accession": "GCA_017152025.1", "taxid": 1755582, "species_taxid": 1755582, "relation_to_type": "type", "validated": true, "ani": 99.9996, "matched_fragments": 1171, "total_fragments": 1175, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hoyosella suaedae", "strain": "strain=LNNU 331112", "accession": "GCA_008312885.1", "taxid": 2605429, "species_taxid": 2605429, "relation_to_type": "type", "validated": true, "ani": 78.0677, "matched_fragments": 260, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoyosella subflava", "strain": "strain=DQS3-9A1", "accession": "GCA_000214175.1", "taxid": 639313, "species_taxid": 639313, "relation_to_type": "type", "validated": true, "ani": 77.6905, "matched_fragments": 173, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoyosella altamirensis", "strain": "strain=DSM 45258", "accession": "GCA_014191505.1", "taxid": 616997, "species_taxid": 616997, "relation_to_type": "type", "validated": true, "ani": 77.5687, "matched_fragments": 172, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia farcinica", "strain": "strain=DSM 43257", "accession": "GCA_900156775.1", "taxid": 37329, "species_taxid": 37329, "relation_to_type": "type", "validated": true, "ani": 76.7773, "matched_fragments": 96, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia farcinica", "strain": "strain=NCTC11134", "accession": "GCA_001182745.2", "taxid": 37329, "species_taxid": 37329, "relation_to_type": "type", "validated": true, "ani": 76.7581, "matched_fragments": 98, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus spongiicola", "strain": "strain=LHW50502", "accession": "GCA_004011835.1", "taxid": 2487352, "species_taxid": 2487352, "relation_to_type": "type", "validated": true, "ani": 76.6555, "matched_fragments": 72, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Millisia brevis", "strain": "strain=NBRC 105863", "accession": "GCA_001552615.1", "taxid": 264148, "species_taxid": 264148, "relation_to_type": "type", "validated": true, "ani": 76.6312, "matched_fragments": 68, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus rhodochrous", "strain": "strain=NCTC10210", "accession": "GCA_900187265.1", "taxid": 1829, "species_taxid": 1829, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6012, "matched_fragments": 98, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium numidiamassiliense", "strain": "strain=AB215", "accession": "GCA_900157365.1", "taxid": 1841861, "species_taxid": 1841861, "relation_to_type": "type", "validated": true, "ani": 76.5782, "matched_fragments": 53, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus oxybenzonivorans", "strain": "strain=S2-17", "accession": "GCA_003130705.1", "taxid": 1990687, "species_taxid": 1990687, "relation_to_type": "type", "validated": true, "ani": 76.5756, "matched_fragments": 98, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fluoranthenivorans", "strain": "strain=DSM 44556", "accession": "GCA_011758805.1", "taxid": 258505, "species_taxid": 258505, "relation_to_type": "type", "validated": true, "ani": 76.4969, "matched_fragments": 68, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia lijiangensis", "strain": "strain=NBRC 108240", "accession": "GCA_001613045.1", "taxid": 299618, "species_taxid": 299618, "relation_to_type": "type", "validated": true, "ani": 76.4363, "matched_fragments": 89, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus rhodochrous", "strain": "strain=DSM 43241", "accession": "GCA_001646825.1", "taxid": 1829, "species_taxid": 1829, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4181, "matched_fragments": 99, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lentiflavum", "strain": "strain=ATCC 51985", "accession": "GCA_022374895.2", "taxid": 141349, "species_taxid": 141349, "relation_to_type": "type", "validated": true, "ani": 76.4098, "matched_fragments": 55, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium tusciae", "strain": "strain=DSM 44338", "accession": "GCA_002086795.1", "taxid": 75922, "species_taxid": 75922, "relation_to_type": "type", "validated": true, "ani": 76.113, "matched_fragments": 58, "total_fragments": 1175, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014643175.1", "gtdb_species": "s__Hoyosella rhizosphaerae", "ani": 100.0, "matched_fragments": 1175, "total_fragments": 1175, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Hoyosella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { 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1175, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001552615.1", "gtdb_species": "s__Millisia brevis", "ani": 76.6312, "matched_fragments": 68, "total_fragments": 1175, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Millisia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004328705.1", "gtdb_species": "s__Rhodococcus sp004328705", "ani": 76.6271, "matched_fragments": 90, "total_fragments": 1175, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015477355.1", "gtdb_species": "s__Nocardia blacklockiae", "ani": 76.0537, "matched_fragments": 84, "total_fragments": 1175, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }