{ "type": "genome", "identifier": "GCF_014643435.1", "organism": "Maribacter cobaltidurans", "title": "Maribacter cobaltidurans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014643435.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245073", "wgs_master": "BMJL00000000.1", "refseq_category": "na", "taxid": "1178778", "species_taxid": "1178778", "organism_name": "Maribacter cobaltidurans", "infraspecific_name": "strain=CGMCC 1.15508", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/12", "asm_name": "ASM1464343v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014643435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/643/435/GCF_014643435.1_ASM1464343v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4568667", "genome_size_ungapped": "4568667", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014643435.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4104", "protein_coding_gene_count": "4032", "non_coding_gene_count": "45", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-12", "dateModified": "2020-09-12", "datePublished": "2020-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Maribacter cobaltidurans" ], "sample_taxid": [ "1178778" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.294 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4568667", "Number of Sequences": "52", "Longest Sequences (bp)": "1450198", "N50 (bp)": "370901", "Gap Ratio (%)": "0.000219", "GCcontent (%)": "39.6", "Number of CDSs": "3999", "Average Protein Length": "340.8", "Coding Ratio (%)": "89.5", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maribacter cobaltidurans", "strain": "strain=CGMCC 1.15508", "accession": "GCA_014643435.1", "taxid": 1178778, "species_taxid": 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80.5318, "matched_fragments": 727, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter flavus", "strain": "strain=KCTC 42508", "accession": "GCA_008386635.1", "taxid": 1658664, "species_taxid": 1658664, "relation_to_type": "type", "validated": true, "ani": 80.4974, "matched_fragments": 711, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Euzebyella saccharophila", "strain": "strain=7SM30", "accession": "GCA_014855495.1", "taxid": 679664, "species_taxid": 679664, "relation_to_type": "type", "validated": true, "ani": 79.2842, "matched_fragments": 187, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter thermophilus", "strain": "strain=HT7-2", "accession": "GCA_001020565.1", "taxid": 1197874, "species_taxid": 1197874, "relation_to_type": "type", "validated": true, "ani": 77.8791, "matched_fragments": 372, "total_fragments": 1501, 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{ "organism_name": "Arenibacter arenosicollis", "strain": "strain=BSSL-BM3", "accession": "GCA_014397245.1", "taxid": 2762274, "species_taxid": 2762274, "relation_to_type": "type", "validated": true, "ani": 76.5524, "matched_fragments": 142, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hymeniacidonis", "strain": "strain=176CP4-71", "accession": "GCA_004296335.1", "taxid": 2517819, "species_taxid": 2517819, "relation_to_type": "type", "validated": true, "ani": 76.4828, "matched_fragments": 95, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter holothuriorum", "strain": "strain=DSM 23405", "accession": "GCA_900168045.1", "taxid": 241145, "species_taxid": 241145, "relation_to_type": "type", "validated": true, "ani": 76.2355, "matched_fragments": 50, "total_fragments": 1501, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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