{ "type": "genome", "identifier": "GCF_014643475.1", "organism": "Streptococcus himalayensis", "title": "Streptococcus himalayensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014643475.1", "bioproject": "PRJNA224116", "biosample": "SAMD00245075", "wgs_master": "BMJN00000000.1", "refseq_category": "na", "taxid": "1888195", "species_taxid": "1888195", "organism_name": "Streptococcus himalayensis", "infraspecific_name": "strain=CGMCC 1.15533", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/11", "asm_name": "ASM1464347v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_014643475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/643/475/GCF_014643475.1_ASM1464347v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2151584", "genome_size_ungapped": "2150488", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "84", "contig_count": "84", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014643475.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "2075", "protein_coding_gene_count": "1967", "non_coding_gene_count": "43", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-11", "dateModified": "2020-09-11", "datePublished": "2020-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus himalayensis" ], "sample_taxid": [ "1888195" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.611 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2151584", "Number of Sequences": "84", "Longest Sequences (bp)": "169537", "N50 (bp)": "52459", "Gap Ratio (%)": "0.050939", "GCcontent (%)": "41.1", "Number of CDSs": "1977", "Average Protein Length": "303.3", "Coding Ratio (%)": "83.6", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus himalayensis", "strain": "strain=CGMCC 1.15533", "accession": "GCA_014643475.1", "taxid": 1888195, "species_taxid": 1888195, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 677, "total_fragments": 679, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus himalayensis", "strain": "strain=HTS2", "accession": "GCA_001708305.1", "taxid": 1888195, "species_taxid": 1888195, "relation_to_type": "type", "validated": true, "ani": 99.9942, "matched_fragments": 679, "total_fragments": 679, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus marmotae", "strain": "strain=HTS5", "accession": "GCA_001623565.1", "taxid": 1825069, "species_taxid": 1825069, "relation_to_type": "type", "validated": true, "ani": 87.8495, "matched_fragments": 299, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus respiraculi", "strain": "strain=HTS25", "accession": "GCA_003595525.1", "taxid": 2021971, "species_taxid": 2021971, "relation_to_type": "type", "validated": true, "ani": 83.0146, "matched_fragments": 242, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cuniculi", "strain": "strain=CCUG 65085", "accession": "GCA_001921845.1", "taxid": 1432788, "species_taxid": 1432788, "relation_to_type": "type", "validated": true, "ani": 79.969, "matched_fragments": 212, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus xiaochunlingii", "strain": "strain=E24", "accession": "GCA_006385805.1", "taxid": 2589788, "species_taxid": 2589788, "relation_to_type": "type", "validated": true, "ani": 78.9679, "matched_fragments": 118, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 78.9189, "matched_fragments": 122, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus australis", "strain": "strain=ATCC 700641", "accession": "GCA_000222745.2", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 78.8403, "matched_fragments": 116, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus timonensis", "strain": "strain=Marseille-P2915", "accession": "GCA_900095845.1", "taxid": 1852387, "species_taxid": 1852387, "relation_to_type": "type", "validated": true, "ani": 78.7031, "matched_fragments": 107, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_011612585.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 78.6965, "matched_fragments": 139, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus australis", "strain": "strain=NCTC13166", "accession": "GCA_900476055.1", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 78.6856, "matched_fragments": 117, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus anginosus", "strain": "strain=ATCC 33397", "accession": "GCA_002088025.1", "taxid": 1328, "species_taxid": 1328, "relation_to_type": "type", "validated": true, "ani": 78.6813, "matched_fragments": 137, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus australis", "strain": "strain=ATCC 700641", "accession": "GCA_000186465.1", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 78.6308, "matched_fragments": 118, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus anginosus", "strain": "strain=NCTC10713", "accession": "GCA_900636475.1", "taxid": 1328, "species_taxid": 1328, "relation_to_type": "type", "validated": true, "ani": 78.6173, "matched_fragments": 138, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=NCTC12854", "accession": "GCA_900459355.1", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5878, "matched_fragments": 136, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chosunense", "strain": "strain=ChDC B353", "accession": "GCA_003626515.1", "taxid": 2707003, "species_taxid": 2707003, "relation_to_type": "type", "validated": true, "ani": 78.5737, "matched_fragments": 134, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=ATCC 15912", "accession": "GCA_000164675.2", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5365, "matched_fragments": 135, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 78.494, "matched_fragments": 131, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus anginosus", "strain": "strain=SK52", "accession": "GCA_000214555.2", "taxid": 1328, "species_taxid": 1328, "relation_to_type": "type", "validated": true, "ani": 78.4613, "matched_fragments": 127, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 78.3919, "matched_fragments": 128, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus saliviloxodontae", "strain": "strain=DSM 27513", "accession": "GCA_016908655.1", "taxid": 1349416, "species_taxid": 1349416, "relation_to_type": "type", "validated": true, "ani": 78.3159, "matched_fragments": 81, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 78.0635, "matched_fragments": 65, "total_fragments": 679, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001708305.1", "gtdb_species": "s__Streptococcus himalayensis", "ani": 99.9942, "matched_fragments": 679, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001623565.1", "gtdb_species": "s__Streptococcus marmotae", "ani": 88.0539, "matched_fragments": 294, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017639855.1", "gtdb_species": "s__Streptococcus sp013623465", "ani": 86.7931, "matched_fragments": 275, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_003595525.1", "gtdb_species": "s__Streptococcus respiraculi", "ani": 82.9814, "matched_fragments": 243, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001921845.1", "gtdb_species": "s__Streptococcus cuniculi", "ani": 79.9371, "matched_fragments": 214, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004570575.1", "gtdb_species": "s__Streptococcus cuniculi_A", "ani": 79.8454, "matched_fragments": 207, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002096815.1", "gtdb_species": "s__Streptococcus mitis_AD", "ani": 78.9017, "matched_fragments": 117, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905221505.1", "gtdb_species": "s__Streptococcus sp905221505", "ani": 78.8127, "matched_fragments": 126, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016648925.1", "gtdb_species": "s__Streptococcus sp900766505", "ani": 78.8063, "matched_fragments": 123, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.2991, "mean_intra_species_ani": "95.66", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 30, "status": "-" }, { "accession": "GCA_905221255.1", "gtdb_species": "s__Streptococcus sp905221255", "ani": 78.7843, "matched_fragments": 116, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "97.53", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_000223255.2", "gtdb_species": "s__Streptococcus infantis_G", "ani": 78.7726, "matched_fragments": 110, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000314795.2", "gtdb_species": "s__Streptococcus sp000314795", "ani": 78.7214, "matched_fragments": 121, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001072375.1", "gtdb_species": "s__Streptococcus pseudopneumoniae_L", "ani": 78.7211, "matched_fragments": 117, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.33", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900636475.1", "gtdb_species": "s__Streptococcus anginosus", "ani": 78.6471, "matched_fragments": 137, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.16", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.78", "num_clustered_genomes": 79, "status": "-" }, { "accession": "GCF_001347015.1", "gtdb_species": "s__Streptococcus pneumoniae_E", "ani": 78.6306, "matched_fragments": 133, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905221155.1", "gtdb_species": "s__Streptococcus sp905221155", "ani": 78.6103, "matched_fragments": 126, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000430305.1", "gtdb_species": "s__Streptococcus mitis_AW", "ani": 78.6076, "matched_fragments": 120, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0354, "mean_intra_species_ani": "95.13", "min_intra_species_ani": "95.13", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905221145.1", "gtdb_species": "s__Streptococcus sp905221145", "ani": 78.6036, "matched_fragments": 130, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001560895.1", "gtdb_species": "s__Streptococcus mitis_Q", "ani": 78.547, "matched_fragments": 138, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.95", "min_intra_species_ani": "95.95", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001811505.1", "gtdb_species": "s__Streptococcus sp001811505", "ani": 78.4786, "matched_fragments": 125, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001073085.1", "gtdb_species": "s__Streptococcus pseudopneumoniae_M", "ani": 78.4496, "matched_fragments": 127, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.77", "min_intra_species_ani": "95.77", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900459125.1", "gtdb_species": "s__Streptococcus constellatus", "ani": 78.3985, "matched_fragments": 131, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "96.57", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 32, "status": "-" }, { "accession": "GCF_008369405.1", "gtdb_species": "s__Streptococcus cristatus_G", "ani": 78.3126, "matched_fragments": 140, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003943815.1", "gtdb_species": "s__Streptococcus cristatus_F", "ani": 78.236, "matched_fragments": 150, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015256435.1", "gtdb_species": "s__Streptococcus sp015256435", "ani": 77.9303, "matched_fragments": 85, "total_fragments": 679, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.157, "cell_length": -0.167, "doubling_h": -0.216, "growth_tmp": 36.667, "optimum_tmp": 36.284, "optimum_ph": 6.89, "genome_size": 2275470.0, "gc_content": 41.3, "coding_genes": 2019.0, "rRNA16S_genes": 4.0, "tRNA_genes": 57.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 0.337, "anaerobic_respiration": 0.146, "aerobic_respiration": 0.516, "mesophilic_range_tmp": 0.969, "thermophilic_range_tmp": 0.03, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.943, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.056, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "himalayensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }