{
    "type": "genome",
    "identifier": "GCF_014643555.1",
    "organism": "Alteromonas lipolytica",
    "title": "Alteromonas lipolytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014643555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245080",
        "wgs_master": "BMJR00000000.1",
        "refseq_category": "na",
        "taxid": "1856405",
        "species_taxid": "1856405",
        "organism_name": "Alteromonas lipolytica",
        "infraspecific_name": "strain=CGMCC 1.15735",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464355v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014643555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/643/555/GCF_014643555.1_ASM1464355v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4996662",
        "genome_size_ungapped": "4996662",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "21",
        "contig_count": "21",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014643555.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "4435",
        "protein_coding_gene_count": "4345",
        "non_coding_gene_count": "61",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alteromonas lipolytica"
        ],
        "sample_taxid": [
            "1856405"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.423 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.75,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4996662",
        "Number of Sequences": "21",
        "Longest Sequences (bp)": "968210",
        "N50 (bp)": "679597",
        "Gap Ratio (%)": "0.000080",
        "GCcontent (%)": "48.4",
        "Number of CDSs": "4382",
        "Average Protein Length": "338.6",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Alteromonas lipolytica",
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                "species_taxid": 1856405,
                "relation_to_type": "type",
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                "total_fragments": 1655,
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            },
            {
                "organism_name": "Alteromonas lipolytica",
                "strain": "strain=JW12",
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                "species_taxid": 1856405,
                "relation_to_type": "type",
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                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alteromonas oceani",
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                "accession": "GCA_003731635.1",
                "taxid": 2071609,
                "species_taxid": 2071609,
                "relation_to_type": "type",
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                "ani": 81.8806,
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                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas alba",
                "strain": "strain=190",
                "accession": "GCA_002993365.1",
                "taxid": 2079529,
                "species_taxid": 2079529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4485,
                "matched_fragments": 794,
                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas macleodii",
                "strain": "strain=ATCC 27126",
                "accession": "GCA_000172635.2",
                "taxid": 28108,
                "species_taxid": 28108,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9718,
                "matched_fragments": 135,
                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas confluentis",
                "strain": "strain=KCTC 42603",
                "accession": "GCA_001757105.1",
                "taxid": 1656094,
                "species_taxid": 1656094,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5393,
                "matched_fragments": 243,
                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinimonas iocasae",
                "strain": "strain=KX18D6",
                "accession": "GCA_006228385.1",
                "taxid": 2572577,
                "species_taxid": 2572577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1919,
                "matched_fragments": 138,
                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas antoniana",
                "strain": "strain=MD_567",
                "accession": "GCA_019249295.1",
                "taxid": 2803813,
                "species_taxid": 2803813,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1556,
                "matched_fragments": 200,
                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas mediterranea",
                "strain": "strain=DE",
                "accession": "GCA_000020585.3",
                "taxid": 314275,
                "species_taxid": 314275,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.037,
                "matched_fragments": 158,
                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinimonas profundi",
                "strain": "strain=HHU 13199",
                "accession": "GCA_014750655.1",
                "taxid": 2729140,
                "species_taxid": 2729140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0066,
                "matched_fragments": 144,
                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraglaciecola aquimarina",
                "strain": "strain=GGW-M5",
                "accession": "GCA_021532655.1",
                "taxid": 1235557,
                "species_taxid": 1235557,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1747,
                "matched_fragments": 69,
                "total_fragments": 1655,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 93.75,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001758465.1",
                "gtdb_species": "s__Alteromonas lipolytica",
                "ani": 99.9944,
                "matched_fragments": 1655,
                "total_fragments": 1655,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_003731635.1",
                "gtdb_species": "s__Alteromonas oceani",
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                "matched_fragments": 818,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_018222405.1",
                "gtdb_species": "s__Alteromonas sp018222405",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_002339125.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
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                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 19,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.182,
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        "coding_genes": 3905.644,
        "rRNA16S_genes": 5.0,
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        "motility": 1.0,
        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Alteromonas",
        "lipolytica"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}