{
    "type": "genome",
    "identifier": "GCF_014643575.1",
    "organism": "Cysteiniphilum litorale",
    "title": "Cysteiniphilum litorale",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_014643575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00245081",
        "wgs_master": "BMJS00000000.1",
        "refseq_category": "na",
        "taxid": "2056700",
        "species_taxid": "2056700",
        "organism_name": "Cysteiniphilum litorale",
        "infraspecific_name": "strain=CGMCC 1.15758",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/12",
        "asm_name": "ASM1464357v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_014643575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/643/575/GCF_014643575.1_ASM1464357v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3264667",
        "genome_size_ungapped": "3264289",
        "gc_percent": "38.500000",
        "replicon_count": "0",
        "scaffold_count": "192",
        "contig_count": "192",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_014643575.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "3064",
        "protein_coding_gene_count": "2985",
        "non_coding_gene_count": "57",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-12",
    "dateModified": "2020-09-12",
    "datePublished": "2020-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cysteiniphilum litorale"
        ],
        "sample_taxid": [
            "2056700"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.922 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3264667",
        "Number of Sequences": "192",
        "Longest Sequences (bp)": "313899",
        "N50 (bp)": "66310",
        "Gap Ratio (%)": "0.011579",
        "GCcontent (%)": "38.4",
        "Number of CDSs": "2899",
        "Average Protein Length": "321.9",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cysteiniphilum litorale",
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                "species_taxid": 2056700,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1007,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Cysteiniphilum litorale",
                "strain": "strain=DSM 101832",
                "accession": "GCA_003428165.1",
                "taxid": 2056700,
                "species_taxid": 2056700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9896,
                "matched_fragments": 986,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cysteiniphilum marinum",
                "strain": "strain=19X3-30",
                "accession": "GCA_014857925.1",
                "taxid": 2774191,
                "species_taxid": 2774191,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6909,
                "matched_fragments": 666,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cysteiniphilum halobium",
                "strain": "strain=SYSU SYW-6",
                "accession": "GCA_003574425.1",
                "taxid": 2219059,
                "species_taxid": 2219059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2453,
                "matched_fragments": 548,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fangia hongkongensis",
                "strain": "strain=DSM 21703",
                "accession": "GCA_000379445.1",
                "taxid": 270495,
                "species_taxid": 270495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2565,
                "matched_fragments": 111,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fangia hongkongensis",
                "strain": "strain=FSC776",
                "accession": "GCA_016604485.1",
                "taxid": 270495,
                "species_taxid": 270495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0355,
                "matched_fragments": 90,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caedibacter taeniospiralis",
                "strain": "strain=51K",
                "accession": "GCA_002803295.2",
                "taxid": 28907,
                "species_taxid": 28907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9697,
                "matched_fragments": 135,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fastidiosibacter lacustris",
                "strain": "strain=NBRC 112274",
                "accession": "GCA_003428155.1",
                "taxid": 2056695,
                "species_taxid": 2056695,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6538,
                "matched_fragments": 150,
                "total_fragments": 1007,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003428165.1",
                "gtdb_species": "s__Cysteiniphilum litorale",
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                "matched_fragments": 986,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Cysteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008711525.1",
                "gtdb_species": "s__Cysteiniphilum sp008711525",
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                "matched_fragments": 626,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Cysteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014857925.1",
                "gtdb_species": "s__Cysteiniphilum marinum",
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                "matched_fragments": 666,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Cysteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_003574425.1",
                "gtdb_species": "s__Cysteiniphilum halobium",
                "ani": 84.2149,
                "matched_fragments": 550,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Cysteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002803295.2",
                "gtdb_species": "s__Caedibacter taeniospiralis",
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                "matched_fragments": 135,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Caedibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003428155.1",
                "gtdb_species": "s__Fastidiosibacter lacustris",
                "ani": 77.6538,
                "matched_fragments": 150,
                "total_fragments": 1007,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Fastidiosibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Cysteiniphilum",
        "litorale"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}